PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013593787.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 324aa MW: 36162 Da PI: 6.6478

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013593787.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.1	1e-15	86	137	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r +h ++Er+RR+++N+ ++ Lr+l+P++ s+K + a+i+ A+++Ik+L+ XP_013593787.1 86 QRITHIAVERNRRRQMNQHLSVLRSLMPQP---FSQKGDQASIVGGAIDFIKELE 137 799*************************...9****************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	2.7E-13	84	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.14E-16	84	148	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.82E-14	84	140	No hit	No description
PROSITE profile	PS50888	15.777	85	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.1E-13	86	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-11	91	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MTLEALSSNG LLNFLLSESL SPTPFKSLLD LDPSPENDII IIPKNTIPEM SQQEPASRQP 60 PPASRGKKRR RRKPRVCKNE EEAENQRITH IAVERNRRRQ MNQHLSVLRS LMPQPFSQKG 120 DQASIVGGAI DFIKELEHQL LSLEAQKLQK DKLSQTVISS TSQDSNCEPE NPHLSLSQFF 180 LHSYDPSQEN RNGSTSSVKT AMEDLEVTLI ETHANIRILS RRRGFQWTSV VATTGPPQLS 240 KLVAALHSLS LSVLHLSVTT LETFAIYSIS TKVEESCQLS SVDDIAGAVH HMLSIIEEEP 300 FCCSTIPELP FTFPLNHTNA THSL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	66	72	KKRRRRK
2	66	73	KKRRRRKP
3	67	72	KRRRRK
4	68	74	RRRRKPR

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534, ECO:0000269\|PubMed:17088607}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013593787.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353555	0.0	AK353555.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-52-J01.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013593787.1	0.0	PREDICTED: transcription factor bHLH71-like
Swissprot	Q56XR0	1e-170	BH071_ARATH; Transcription factor bHLH71
TrEMBL	A0A0D3D9K0	0.0	A0A0D3D9K0_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6EE28	0.0	A0A3P6EE28_BRAOL; Uncharacterized protein
STRING	Bo7g075600.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10389	25	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46690.1	1e-147	beta HLH protein 71

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]