PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013593757.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 461aa    MW: 51823.4 Da    PI: 6.7298
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013593757.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.43e-16741135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  XP_013593757.1  7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGS 41
                    ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.3E-10155IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.62E-11546No hitNo description
CDDcd002021.16E-16653No hitNo description
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF003205.2E-14741IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.1E-13740IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PfamPF139198.7E-7237327IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG SLVNYTPLHS RAEVDDINDH  60
RAPKMMMMNK KLPKRKPYQE NFTVKRTNYE FNNGFKKRTL DELEASNRSS SGSVVSNSES  120
CDQSNAWETT FPSKKRTCVV GRPKPASSVE KLTKDLYSIL QEQQSSCLSG TSEEDLLFEN  180
ESPMVIGHGS VLLRDPHEES EASSLLAESS KSSSMHSAEF GVNKSQRSLN FGCRTKPQVL  240
GRRSLPLCNI DLKDVFNFDE FIEKFTKEEQ QKLMKLLPGV DSVDLPESLR SMFECSQFKD  300
NFSLFQQLVA DGVFQPLSSS SSSGSKLEEL KTLAKLALSD PNKSHLLESY QMLKRKGIED  360
SVAKPSDNHS LVTIERPCES LNQNFSETRT VMKSPKEVIK IRSKQIETKE IIENSVSSFN  420
HMSYGESMVY SHEDNDISDQ DLLLDVPSNG SYPQAELLHM I
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013593757.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892610.0AC189261.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB021P11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013593757.10.0PREDICTED: GATA transcription factor 27 isoform X2
SwissprotQ5PP380.0GAT27_ARATH; GATA transcription factor 27
TrEMBLA0A0D3D9S10.0A0A0D3D9S1_BRAOL; Uncharacterized protein
STRINGBo7g077300.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47140.10.0GATA transcription factor 27