PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013593756.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | GATA | ||||||||
Protein Properties | Length: 463aa MW: 52080.7 Da PI: 6.5844 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 50.4 | 3.1e-16 | 7 | 41 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ XP_013593756.1 7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGS 41 ****************88888***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 3.3E-10 | 1 | 55 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.66E-11 | 5 | 46 | No hit | No description |
CDD | cd00202 | 1.10E-16 | 6 | 53 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 7 | 32 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 5.2E-14 | 7 | 41 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.2 | 7 | 40 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 9.1E-13 | 7 | 40 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF13919 | 8.3E-7 | 237 | 328 | IPR028020 | ASX homology domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 463 aa Download sequence Send to blast |
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG SLVNYTPLHS RAEVDDINDH 60 RAPKMMMMNK KLPKRKPYQE NFTVKRTNYE FNNGFKKRTL DELEASNRSS SGSVVSNSES 120 CDQSNAWETT FPSKKRTCVV GRPKPASSVE KLTKDLYSIL QEQQSSCLSG TSEEDLLFEN 180 ESPMVIGHGS VLLRDPHEES EASSLLAESS KSSSMHSAEF GVNKSQRSLN FGCRTKPQVL 240 GRRSLPLCNI DLKDVFNFDE FIEKFTKEEQ QKLMKLLPGV DSVDLPESLR SMFECSQFKD 300 NFSLFQQLVA DGVFQPLSSS SSSGSKLEEL KTLAKLALSD PNKSHLLESY QMLKEQRKGI 360 EDSVAKPSDN HSLVTIERPC ESLNQNFSET RTVMKSPKEV IKIRSKQIET KEIIENSVSS 420 FNHMSYGESM VYSHEDNDIS DQDLLLDVPS NGSYPQAELL HMI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013593756.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189261 | 0.0 | AC189261.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB021P11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013593756.1 | 0.0 | PREDICTED: GATA transcription factor 27 isoform X1 | ||||
Swissprot | Q5PP38 | 0.0 | GAT27_ARATH; GATA transcription factor 27 | ||||
TrEMBL | A0A0D3D9S1 | 0.0 | A0A0D3D9S1_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g077300.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1606 | 27 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47140.1 | 0.0 | GATA transcription factor 27 |