PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013593630.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GRAS

Protein Properties

Length: 497aa MW: 55734.4 Da PI: 7.0795

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013593630.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	449.7	1.9e-137	126	497	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 + L++cA+a+s++dl +a++++++l++++s +g+p+qRl ay++e+L a+la+s+s++yk+l+ +++ s+e l+++++++ev+P++kf+++ XP_013593630.1 126 RADLVSCAQALSENDLMMAHSMMEKLRQMVSVSGEPIQRLGAYLLEGLVAKLASSGSSIYKSLNRFPEP--ASTELLSYMHILYEVCPYFKFGYM 218 678**********************************************************988887..599***************** PP GRAS 97 taNqaIleavegeervHiiDfdis.qGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 aN aI ea+++e+rvHiiDf+i+ qG QW++L+qa+a+Rp+gpp++RiTg+++ +s + l+ +g+rLak+A++++vpfefn v+ + ++ XP_013593630.1 219 SANGAIAEAMKEENRVHIIDFQIGtQGSQWVTLIQAFAARPGGPPRIRITGIDDTTSAyaRGGGLSIVGNRLAKLAKQFNVPFEFNS-VSVSASE 312 *******************659************************998899999********************.7999* PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 ++l++L v+ gEalaVn+++ lhr++desvs++++rd++L++vkslsPkvv++veqe+++n++sF+ rf e+++yy a+f+s++++lpr++++ri XP_013593630.1 313 VKLKDLGVRAGEALAVNFAFVLHRMPDESVSTKNHRDRLLRMVKSLSPKVVTLVEQESNTNTASFFPRFKETMDYYDAMFESIDVTLPRNHKQRI 407 ********************************************************************************************* PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +vE+++l+r++vn++acega+r+erhe l+kWr+r+e+aGF+++pls +++++k+llr+++++ yr+ee++g+l+lgW++r Lv+ +aW+ XP_013593630.1 408 NVEQHCLARDVVNIIACEGADRVERHELLGKWRSRFEMAGFSSYPLSPLVNSTIKSLLRNYSDK-YRLEERDGALYLGWMQRDLVASCAWK 497 **********************************************************55.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	68.615	99	478	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.5E-135	126	497	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence Send to blast
MYKHPRQKTE AYTLPPFEAS SVGKLRYIPA HNSLKRYCML EPSSSSLVSP AYAVLSNANS 60 SAHEDTSGSC VTDDFNDKIK ELETVMMGPD SLDLVFDYND SFDSTSCQET NSWRSTLEAI 120 SRRDLRADLV SCAQALSEND LMMAHSMMEK LRQMVSVSGE PIQRLGAYLL EGLVAKLASS 180 GSSIYKSLNR FPEPASTELL SYMHILYEVC PYFKFGYMSA NGAIAEAMKE ENRVHIIDFQ 240 IGTQGSQWVT LIQAFAARPG GPPRIRITGI DDTTSAYARG GGLSIVGNRL AKLAKQFNVP 300 FEFNSVSVSA SEVKLKDLGV RAGEALAVNF AFVLHRMPDE SVSTKNHRDR LLRMVKSLSP 360 KVVTLVEQES NTNTASFFPR FKETMDYYDA MFESIDVTLP RNHKQRINVE QHCLARDVVN 420 IIACEGADRV ERHELLGKWR SRFEMAGFSS YPLSPLVNST IKSLLRNYSD KYRLEERDGA 480 LYLGWMQRDL VASCAWK

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence Send to blast

MYKHPRQKTE AYTLPPFEAS SVGKLRYIPA HNSLKRYCML EPSSSSLVSP AYAVLSNANS  60
SAHEDTSGSC VTDDFNDKIK ELETVMMGPD SLDLVFDYND SFDSTSCQET NSWRSTLEAI  120
SRRDLRADLV SCAQALSEND LMMAHSMMEK LRQMVSVSGE PIQRLGAYLL EGLVAKLASS  180
GSSIYKSLNR FPEPASTELL SYMHILYEVC PYFKFGYMSA NGAIAEAMKE ENRVHIIDFQ  240
IGTQGSQWVT LIQAFAARPG GPPRIRITGI DDTTSAYARG GGLSIVGNRL AKLAKQFNVP  300
FEFNSVSVSA SEVKLKDLGV RAGEALAVNF AFVLHRMPDE SVSTKNHRDR LLRMVKSLSP  360
KVVTLVEQES NTNTASFFPR FKETMDYYDA MFESIDVTLP RNHKQRINVE QHCLARDVVN  420
IIACEGADRV ERHELLGKWR SRFEMAGFSS YPLSPLVNST IKSLLRNYSD KYRLEERDGA  480
LYLGWMQRDL VASCAWK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-62	129	497	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269\|PubMed:10817761}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013593630.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352533	0.0	AK352533.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-04-F03.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013593626.1	0.0	PREDICTED: scarecrow-like transcription factor PAT1 isoform X1
Refseq	XP_013593627.1	0.0	PREDICTED: scarecrow-like transcription factor PAT1 isoform X1
Refseq	XP_013593629.1	0.0	PREDICTED: scarecrow-like transcription factor PAT1 isoform X1
Refseq	XP_013593630.1	0.0	PREDICTED: scarecrow-like transcription factor PAT1 isoform X1
Refseq	XP_013593631.1	0.0	PREDICTED: scarecrow-like transcription factor PAT1 isoform X1
Refseq	XP_013593632.1	0.0	PREDICTED: scarecrow-like transcription factor PAT1 isoform X1
Refseq	XP_013593633.1	0.0	PREDICTED: scarecrow-like transcription factor PAT1 isoform X1
Refseq	XP_013593634.1	0.0	PREDICTED: scarecrow-like transcription factor PAT1 isoform X1
Refseq	XP_013593635.1	0.0	PREDICTED: scarecrow-like transcription factor PAT1 isoform X1
Swissprot	Q9LDL7	0.0	PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBL	A0A0D3DBQ4	0.0	A0A0D3DBQ4_BRAOL; Uncharacterized protein
STRING	Bo7g089080.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48150.2	0.0	GRAS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Heyman J, et al. The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence. Nat Plants, 2016. 2(11): p. 16165 [PMID:27797356]