PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013593301.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | LBD | ||||||||
Protein Properties | Length: 259aa MW: 29512.8 Da PI: 5.4748 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126 | 1.8e-39 | 36 | 135 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkCa+dC lapyfp++++++f n+hklFG+sn++k++k+l++ ++++am +++++++ara+dP++G++++i+klq q+e +k+el+ XP_013593301.1 36 ACAACKYQRRKCAPDCLLAPYFPHDRHRQFLNAHKLFGVSNITKIIKDLSPPDKDAAMYTIMFQSDARANDPIEGCYSIIRKLQYQIEYSKNELD 130 7*********************************************************************************************9 PP DUF260 96 llkee 100 ++ ++ XP_013593301.1 131 MVIQQ 135 88776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.859 | 35 | 136 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.4E-36 | 36 | 132 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MPSGKPSSSV FSLHPKPTPL KPSSSTTSNN NTTNQACAAC KYQRRKCAPD CLLAPYFPHD 60 RHRQFLNAHK LFGVSNITKI IKDLSPPDKD AAMYTIMFQS DARANDPIEG CYSIIRKLQY 120 QIEYSKNELD MVIQQLAVFR NHHQEPHIQI QEPEDLSSFS SSCDLNNNNS ITYNYPLHHV 180 QEPVQQQQEQ QYCASGNFNG LQEDMWCLQL QDSSTTVNMK GGFIDECEDV KPVEEVSSET 240 HEFEHHHDGF VEEPYIISS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-26 | 37 | 136 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-26 | 37 | 136 | 12 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013593301.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013593301.1 | 0.0 | PREDICTED: LOB domain-containing protein 22-like | ||||
Swissprot | Q9LRW1 | 1e-145 | LBD22_ARATH; LOB domain-containing protein 22 | ||||
TrEMBL | A0A0D3ADU4 | 0.0 | A0A0D3ADU4_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g134830.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6498 | 26 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 1e-140 | LOB domain-containing protein 22 |
Publications ? help Back to Top | |||
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