PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013593078.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SBP
Protein Properties Length: 432aa    MW: 48180.7 Da    PI: 7.9503
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013593078.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.71.1e-40178253277
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     CqvegC+ dls+ak+yhr+h++Ce hsk p+v+v+gle+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk++
  XP_013593078.1 178 CQVEGCNLDLSSAKDYHRKHRICENHSKFPKVIVNGLERRFCQQCSRFHCLSEFDEKKRSCRRRLSDHNARRRKPN 253
                     **************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.1E-33171239IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.812175252IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.35E-38176256IPR004333Transcription factor, SBP-box
PfamPF031103.7E-31178251IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MECNAKPSLQ WEWDNLISFG TSSAEIPKKQ RPMDWENDGF DCTTFYSSSF STVAAYGGSS  60
GSDLAHAFSK SSKSTSISSS SAEVRTYNFT SEAGESVPAG SSEEFAMGID TSPSLELSFG  120
SGDPVLGLKL GKRTYFEDFW EVENAKGSTA LPVSLASSSA SPVKKSKPIS QKLQTPHCQV  180
EGCNLDLSSA KDYHRKHRIC ENHSKFPKVI VNGLERRFCQ QCSRFHCLSE FDEKKRSCRR  240
RLSDHNARRR KPNPGRTYDG KQHMDFVWNR FALIHPRSEE KFLWPNPKPV PARGLLQEPA  300
MTEMPSKLFT EQCGFGLLDP KTKTTRAELF SKDLLEKVTI SSHISTSQDL DGALSLLSNS  360
TPWVSSDQPR RFSLNHHSTS NLQPVVHGSV TQPISVSSYW QPDPPAVEGS TALPRNGEGQ  420
FNDHYNLNQF YN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-261782511184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233250KKRSCRRRLSDHNARRRK
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively during plant development, weak increase during flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:14573523}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013593078.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157 (Probable). Up-regulated by Turnip mosaic virus P1/HC-Pro protein, that acts as an antagonist of miR156. {ECO:0000269|PubMed:12202040, ECO:0000269|PubMed:12586064, ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013593077.10.0PREDICTED: squamosa promoter-binding-like protein 2 isoform X3
RefseqXP_013593078.10.0PREDICTED: squamosa promoter-binding-like protein 2 isoform X3
RefseqXP_013593079.10.0PREDICTED: squamosa promoter-binding-like protein 2 isoform X3
SwissprotQ9S8400.0SPL2_ARATH; Squamosa promoter-binding-like protein 2
TrEMBLA0A0D3D8L20.0A0A0D3D8L2_BRAOL; Uncharacterized protein (Fragment)
STRINGBo7g065290.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.30.0squamosa promoter binding protein-like 2