PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013593077.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | SBP | ||||||||
Protein Properties | Length: 432aa MW: 48180.7 Da PI: 7.9503 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129.7 | 1.1e-40 | 178 | 253 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 CqvegC+ dls+ak+yhr+h++Ce hsk p+v+v+gle+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk++ XP_013593077.1 178 CQVEGCNLDLSSAKDYHRKHRICENHSKFPKVIVNGLERRFCQQCSRFHCLSEFDEKKRSCRRRLSDHNARRRKPN 253 **************************************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.1E-33 | 171 | 239 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.812 | 175 | 252 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.35E-38 | 176 | 256 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.7E-31 | 178 | 251 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 432 aa Download sequence Send to blast |
MECNAKPSLQ WEWDNLISFG TSSAEIPKKQ RPMDWENDGF DCTTFYSSSF STVAAYGGSS 60 GSDLAHAFSK SSKSTSISSS SAEVRTYNFT SEAGESVPAG SSEEFAMGID TSPSLELSFG 120 SGDPVLGLKL GKRTYFEDFW EVENAKGSTA LPVSLASSSA SPVKKSKPIS QKLQTPHCQV 180 EGCNLDLSSA KDYHRKHRIC ENHSKFPKVI VNGLERRFCQ QCSRFHCLSE FDEKKRSCRR 240 RLSDHNARRR KPNPGRTYDG KQHMDFVWNR FALIHPRSEE KFLWPNPKPV PARGLLQEPA 300 MTEMPSKLFT EQCGFGLLDP KTKTTRAELF SKDLLEKVTI SSHISTSQDL DGALSLLSNS 360 TPWVSSDQPR RFSLNHHSTS NLQPVVHGSV TQPISVSSYW QPDPPAVEGS TALPRNGEGQ 420 FNDHYNLNQF YN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-26 | 178 | 251 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 233 | 250 | KKRSCRRRLSDHNARRRK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed constitutively during plant development, weak increase during flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:14573523}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013593077.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157 (Probable). Up-regulated by Turnip mosaic virus P1/HC-Pro protein, that acts as an antagonist of miR156. {ECO:0000269|PubMed:12202040, ECO:0000269|PubMed:12586064, ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013593077.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 2 isoform X3 | ||||
Refseq | XP_013593078.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 2 isoform X3 | ||||
Refseq | XP_013593079.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 2 isoform X3 | ||||
Swissprot | Q9S840 | 0.0 | SPL2_ARATH; Squamosa promoter-binding-like protein 2 | ||||
TrEMBL | A0A0D3D8L2 | 0.0 | A0A0D3D8L2_BRAOL; Uncharacterized protein (Fragment) | ||||
STRING | Bo7g065290.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 0.0 | squamosa promoter binding protein-like 2 |