PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013593076.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SBP
Protein Properties Length: 485aa    MW: 54389 Da    PI: 8.0022
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013593076.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.41.3e-40231306277
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     CqvegC+ dls+ak+yhr+h++Ce hsk p+v+v+gle+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk++
  XP_013593076.1 231 CQVEGCNLDLSSAKDYHRKHRICENHSKFPKVIVNGLERRFCQQCSRFHCLSEFDEKKRSCRRRLSDHNARRRKPN 306
                     **************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.5E-33224292IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.812228305IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.88E-38229309IPR004333Transcription factor, SBP-box
PfamPF031104.5E-31231304IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MPKIFTSQFC LSRSILSSLY LLALDFLWTV RPHGLVTNRV KEENEVFWCF SVCMECNAKP  60
SLQWEWDNLI SFGTSSAEIP KKQRPMDWEN DGFDCTTFYS SSFSTVAAYG GSSGSDLAHA  120
FSKSSKSTSI SSSSAEVRTY NFTSEAGESV PAGSSEEFAM GIDTSPSLEL SFGSGDPVLG  180
LKLGKRTYFE DFWEVENAKG STALPVSLAS SSASPVKKSK PISQKLQTPH CQVEGCNLDL  240
SSAKDYHRKH RICENHSKFP KVIVNGLERR FCQQCSRFHC LSEFDEKKRS CRRRLSDHNA  300
RRRKPNPGRT YDGKQHMDFV WNRFALIHPR SEEKFLWPNP KPVPARGLLQ EPAMTEMPSK  360
LFTEQCGFGL LDPKTKTTRA ELFSKDLLEK VTISSHISTS QDLDGALSLL SNSTPWVSSD  420
QPRRFSLNHH STSNLQPVVH GSVTQPISVS SYWQPDPPAV EGSTALPRNG EGQFNDHYNL  480
NQFYN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-262313041184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1286303KKRSCRRRLSDHNARRRK
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively during plant development, weak increase during flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:14573523}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013593076.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157 (Probable). Up-regulated by Turnip mosaic virus P1/HC-Pro protein, that acts as an antagonist of miR156. {ECO:0000269|PubMed:12202040, ECO:0000269|PubMed:12586064, ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013593076.10.0PREDICTED: squamosa promoter-binding-like protein 2 isoform X2
SwissprotQ9S8400.0SPL2_ARATH; Squamosa promoter-binding-like protein 2
TrEMBLA0A0D3D8L20.0A0A0D3D8L2_BRAOL; Uncharacterized protein (Fragment)
STRINGBo7g065290.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.30.0squamosa promoter binding protein-like 2