PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013593075.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | SBP | ||||||||
Protein Properties | Length: 516aa MW: 57523.6 Da PI: 8.3858 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129.3 | 1.4e-40 | 262 | 337 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 CqvegC+ dls+ak+yhr+h++Ce hsk p+v+v+gle+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk++ XP_013593075.1 262 CQVEGCNLDLSSAKDYHRKHRICENHSKFPKVIVNGLERRFCQQCSRFHCLSEFDEKKRSCRRRLSDHNARRRKPN 337 **************************************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.7E-33 | 255 | 323 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.812 | 259 | 336 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.14E-38 | 260 | 340 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.9E-31 | 262 | 335 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 516 aa Download sequence Send to blast |
MNESSKKVEA GERQFDPSPS PNLVLRFAHI TCFLSLSLLF SSPTLVLLSK CSVLCQAKKG 60 SFTPLTTRSF PNSLINRFWC FSVCMECNAK PSLQWEWDNL ISFGTSSAEI PKKQRPMDWE 120 NDGFDCTTFY SSSFSTVAAY GGSSGSDLAH AFSKSSKSTS ISSSSAEVRT YNFTSEAGES 180 VPAGSSEEFA MGIDTSPSLE LSFGSGDPVL GLKLGKRTYF EDFWEVENAK GSTALPVSLA 240 SSSASPVKKS KPISQKLQTP HCQVEGCNLD LSSAKDYHRK HRICENHSKF PKVIVNGLER 300 RFCQQCSRFH CLSEFDEKKR SCRRRLSDHN ARRRKPNPGR TYDGKQHMDF VWNRFALIHP 360 RSEEKFLWPN PKPVPARGLL QEPAMTEMPS KLFTEQCGFG LLDPKTKTTR AELFSKDLLE 420 KVTISSHIST SQDLDGALSL LSNSTPWVSS DQPRRFSLNH HSTSNLQPVV HGSVTQPISV 480 SSYWQPDPPA VEGSTALPRN GEGQFNDHYN LNQFYN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 5e-26 | 262 | 335 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 317 | 334 | KKRSCRRRLSDHNARRRK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed constitutively during plant development, weak increase during flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:14573523}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013593075.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157 (Probable). Up-regulated by Turnip mosaic virus P1/HC-Pro protein, that acts as an antagonist of miR156. {ECO:0000269|PubMed:12202040, ECO:0000269|PubMed:12586064, ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013593075.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 2 isoform X1 | ||||
Swissprot | Q9S840 | 0.0 | SPL2_ARATH; Squamosa promoter-binding-like protein 2 | ||||
TrEMBL | A0A0D3D8L2 | 0.0 | A0A0D3D8L2_BRAOL; Uncharacterized protein (Fragment) | ||||
STRING | Bo7g065290.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6562 | 26 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 0.0 | squamosa promoter binding protein-like 2 |