PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013593065.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 334aa    MW: 37412.5 Da    PI: 9.9088
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013593065.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_124.36.7e-082032401754
                     HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1  17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                     A+rsR RK+++i eLe+ v++L+ae ++   el+ l++
  XP_013593065.1 203 AQRSRVRKLQYISELERNVQTLQAEGSKVSAELDFLNQ 240
                     89**************************9999998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003380.0073192251IPR004827Basic-leucine zipper domain
CDDcd147031.34E-14195242No hitNo description
Gene3DG3DSA:1.20.5.1701.5E-7203245No hitNo description
SuperFamilySSF579597.74E-6203245No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MAGTKGSESV RSLMNPGKSA LLPPKIPFPS GLMGSRHSHK VSVEKAHQRT SSESHLVEEE  60
LPFWLDDLLN EPESPARKSG HRRSASDSYA YLDVANAATT ISDFSYRNPA ASIQRGIQEL  120
DPSQDASFYA DGSFLKQRNR PSGARPSWTR ESVGGGKHMG ASSYMSQDAT AETKRFSSEE  180
NNSNPQPGAY EADNTKRAKQ QFAQRSRVRK LQYISELERN VQTLQAEGSK VSAELDFLNQ  240
RNLILSLENK ALKHRLESIA QEKLIKQLEQ EVLEREIGRL RALHQQQQHT RQQSASHKRA  300
SSKDLDSQFS TLSLNAKDSN CRRDSLSVMG QFHF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013593065.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0039801e-152BT003980.1 Arabidopsis thaliana clone RAFL15-22-D03 (R20596) putative bZIP family transcription factor (At1g58110) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013593065.10.0PREDICTED: uncharacterized protein At4g06598 isoform X1
SwissprotQ8W3M72e-44Y4598_ARATH; Uncharacterized protein At4g06598
TrEMBLA0A0D3AA050.0A0A0D3AA05_BRAOL; Uncharacterized protein
STRINGBo1g087780.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33602444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58110.21e-164bZIP family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]