PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013592919.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 441aa MW: 49028.3 Da PI: 6.6861 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.1 | 5.1e-10 | 293 | 351 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr +r NR +A rs +RK +i eLe kv++L++e ++L +l l+ + l++++ XP_013592919.1 293 KRVKRILANRQSAARSKERKMRYIVELEHKVQTLQTEATTLSAQLTLLQRDMMGLTNQN 351 899******************************************99998877777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 8.5E-19 | 289 | 353 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.76 | 291 | 354 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 4.7E-9 | 291 | 350 | No hit | No description |
SuperFamily | SSF57959 | 1.37E-11 | 293 | 349 | No hit | No description |
Pfam | PF00170 | 8.9E-9 | 293 | 350 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 1.32E-23 | 294 | 343 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 441 aa Download sequence Send to blast |
MGETDTDMMI HRHHSSLGSC SIPKQQQQQQ EVEINPNNLI RSSAAAQFSS ESGNSNSKRV 60 GVPPTSPYSQ IHSRSMSQPS SFFSFDSLPP LSPSPFRDHD HPSSLFTRLV GECLPPRKSH 120 RRSNSDIPTG LSPIPPTPLE RSTNPFVKKE DMDDLFSAYM NLDNIDASDN LSRDDMESSR 180 ASGTKTNSDT EGDSSSVNES GGGDLNNNNL KRRAGGGDIA PTSRHYRSVS VDSCFMDKLS 240 FADDSLKQVS PTNSVDRAPA FSIEFNNGEF TAAEMKKIMA NDKLAEMAIS DPKRVKRILA 300 NRQSAARSKE RKMRYIVELE HKVQTLQTEA TTLSAQLTLL QRDMMGLTNQ NNELKFRLQA 360 MEQQARLRDA LNEALNGEVQ RLKLAIGESS HNNEADRSKM QSLNAEMFQQ LNISQLRQQQ 420 PQSQSQSQQN GTMSTKPESN E |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013592919.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY080839 | 1e-172 | AY080839.1 Arabidopsis thaliana unknown protein (At4g38900) mRNA, complete cds. | |||
GenBank | AY150435 | 1e-172 | AY150435.1 Arabidopsis thaliana unknown protein (At4g38900) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013592919.1 | 0.0 | PREDICTED: transcription factor VIP1 | ||||
Refseq | XP_013592920.1 | 0.0 | PREDICTED: transcription factor VIP1 | ||||
Refseq | XP_013592921.1 | 0.0 | PREDICTED: transcription factor VIP1 | ||||
TrEMBL | A0A0D3DIF7 | 0.0 | A0A0D3DIF7_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6F6T2 | 0.0 | A0A3P6F6T2_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g119550.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4224 | 27 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38900.3 | 1e-159 | bZIP family protein |