PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013592856.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 317aa    MW: 35230.2 Da    PI: 4.5295
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013592856.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.81.7e-15117164253
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                     +  GVr++k +g+W+AeIr+p     +  r +lg+f+t+e A++a+i+ r+++
  XP_013592856.1 117 KRVGVRQRK-WGKWAAEIRHPI----TkIRTWLGTFDTEEAAYQAYIEKRREY 164
                     568*****9.**********72....36**********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.05E-18116157No hitNo description
PROSITE profilePS5103216.766117174IPR001471AP2/ERF domain
SMARTSM003801.5E-14117177IPR001471AP2/ERF domain
SuperFamilySSF541715.82E-14118168IPR016177DNA-binding domain
PRINTSPR003678.5E-6118129IPR001471AP2/ERF domain
PfamPF008473.7E-9119165IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-17120161IPR001471AP2/ERF domain
PRINTSPR003678.5E-6140156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MVEISKQQSL VDMKKPKRSN SLLSSSSHPQ DTHQQPLRKV RIIVNDPYAT DDSSSDEEEV  60
VKQPRQVKRI VREVNFPPLE PPRVEPSVSS SQDSTKTTSK KVVSASASAS PALRPKKRVG  120
VRQRKWGKWA AEIRHPITKI RTWLGTFDTE EAAYQAYIEK RREYDALVGI TNDSVSETSQ  180
CSRSSPLEQD TSASALTCVK PNEEEEIKIT ATDVVPSKEV LFDFNFADLP IPDFGFFEEP  240
MAGGVNEEDL DFDCFFTDDQ LDDFGLLDDI NGFGDCGPSA LPDFDFADLG LDLAGSSFLG  300
DQNAPQHITC TRKSFAT
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013592856.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893080.0AC189308.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034A02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013592855.10.0PREDICTED: ethylene-responsive transcription factor ERF118-like
RefseqXP_013592856.10.0PREDICTED: ethylene-responsive transcription factor ERF118-like
SwissprotQ9CA271e-106EF118_ARATH; Ethylene-responsive transcription factor ERF118
TrEMBLA0A0D3CXU80.0A0A0D3CXU8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6H4I40.0A0A3P6H4I4_BRAOL; Uncharacterized protein
STRINGBo6g096060.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.21e-74ERF family protein
Publications ? help Back to Top
  1. Tran MK,Schultz CJ,Baumann U
    Conserved upstream open reading frames in higher plants.
    BMC Genomics, 2008. 9: p. 361
    [PMID:18667093]