PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013592830.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 383aa    MW: 42491.4 Da    PI: 6.7845
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013592830.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.88.3e-27207266259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-.SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkvers.aedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqK+ k ++ pr+YYrC+++ +Cpv+k+v+r+ ++d+++  +tYeg+H+h+
  XP_013592830.1 207 NDGCQWRKYGQKTAKANPLPRAYYRCSMSsNCPVRKQVQRCgEDDTSAYMTTYEGTHDHP 266
                     8***************************99**********934578899**********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.2E-28191268IPR003657WRKY domain
PROSITE profilePS5081124.593201268IPR003657WRKY domain
SuperFamilySSF1182903.27E-24202268IPR003657WRKY domain
SMARTSM007749.6E-33206267IPR003657WRKY domain
PfamPF031063.5E-25207266IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MIKEKISSCV HPSDGIVESD KEVELDATKA KLEKVREENE KLKLLLSTVL TDYKSLQMHV  60
SNVIRPQHEA SMELDINSHD DFCVDVSLRL GRSDLNVSKN VDEIDKISLD KISDEISEGS  120
DKKRSALGLG FQIQSCEDPD TDPTMKLDYL SKDFKNTKAD NKCISSRKDI KTARNEDHQE  180
ALEVREHPGL KKTRVCVKAP CEDPSINDGC QWRKYGQKTA KANPLPRAYY RCSMSSNCPV  240
RKQVQRCGED DTSAYMTTYE GTHDHPLPME ATHMAAGTSA AASLLQSGSS SSASLSYYFP  300
FHHVSFSTTN AHPTVTLDLT RPNYDPNQLP AHSSLSFSSS SSDRPSPSNS HTLSFSGLRS  360
QAPLTKYSQM APLSHQTKLS GQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-182062681474WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013592830.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9124040.0EU912404.1 Brassica napus WRKY transcription factor 36 (WRKY36.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013592830.10.0PREDICTED: probable WRKY transcription factor 36
SwissprotQ9CAR41e-156WRK36_ARATH; Probable WRKY transcription factor 36
TrEMBLA0A0D3CZE40.0A0A0D3CZE4_BRAOL; Uncharacterized protein
TrEMBLC4N0W90.0C4N0W9_BRANA; BnaC06g30870D protein
STRINGBo6g110430.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139131825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69810.11e-149WRKY DNA-binding protein 36
Publications ? help Back to Top
  1. Yang Y, et al.
    UVR8 interacts with WRKY36 to regulate HY5 transcription and hypocotyl elongation in Arabidopsis.
    Nat Plants, 2018. 4(2): p. 98-107
    [PMID:29379156]