PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013592621.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 419aa    MW: 45877.1 Da    PI: 9.9339
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013592621.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.36.2e-06179202123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     + Cp Cg++F+  ++L+ H+ + H
  XP_013592621.1 179 FACPQCGEVFPKLETLEIHQAVrH 202
                     78******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.868179207IPR007087Zinc finger, C2H2
PROSITE patternPS000280181202IPR007087Zinc finger, C2H2
SuperFamilySSF563992.21E-20204415No hitNo description
Gene3DG3DSA:3.90.228.101.8E-12209416IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MAPLPFLPAQ TKSQTRLSSD SKKKNGNKKT STQPPQTQTL KQTQKLKQKT VSSSSSSSWS  60
QIKNLLSCKQ IEGPRVHDPS KITLSSCGSS LCKFSDVIYG NARVIHRSDH SPESSNLGQD  120
GGLLIRKPAT RGSSSTVRSN GCGAYTSSSK AMHFRKLSGC YECHMIVDPS RYPISPRIFA  180
CPQCGEVFPK LETLEIHQAV RHAVSELGPE DSGRNIVDII FKSSWLRKDG PLYKIERILK  240
VHNTQRTIQR FEDCRDAVKS HAHASTRKEP RSAADGNELL RFHCTTVSCS LGSRGSTSLC  300
SNIPGCRVCT IIRHGFHAKT LRLGSGSNEI KGVRTTASSG RAHDALRCFD QRRAMLVCRV  360
IAGRVRRGQS DAPEDENDSC SYDSVAGAAG VYTNLDDLAV LNPKAILPCF VVIYKVSEP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013592621.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2288790.0AK228879.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-20-B08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013592621.10.0PREDICTED: uncharacterized protein LOC106300905
RefseqXP_013746890.20.0uncharacterized protein LOC106449724
TrEMBLA0A078G8C20.0A0A078G8C2_BRANA; BnaC06g01230D protein
STRINGBra015598.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19162880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-158C2H2-like zinc finger protein