PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013592508.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 278aa MW: 31377.2 Da PI: 6.1732 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.9 | 2e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd lv ++k++G g+W+t +++ g+ R++k+c++rw++yl XP_013592508.1 14 KGEWTAEEDRMLVAYIKEHGLGDWRTLPKRAGLQRCGKSCRLRWLNYL 61 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 56.9 | 4.8e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T++E+e +++ + +lG++ W++Ia+ m+ +Rt++++k++w++ XP_013592508.1 67 RGKFTPQEEEDIIKFHSLLGNR-WAAIAKQMP-NRTDNDIKNHWNSC 111 89********************.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.994 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.07E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.51E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.031 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 6.0E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.94E-10 | 69 | 109 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-25 | 69 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MGRTTWFDDD GIKKGEWTAE EDRMLVAYIK EHGLGDWRTL PKRAGLQRCG KSCRLRWLNY 60 LRPGIKRGKF TPQEEEDIIK FHSLLGNRWA AIAKQMPNRT DNDIKNHWNS CLKKRLVRSG 120 IDPMTHKPTV NVAKATSSST SSSTAPTPSS SSATSSSFSS TGSARLLNKL AAGISSRKHA 180 LDRIKNVIMS KPRQAVEEDE MMIGSKEDEE VTGCSMEIDE NLICPTSFDE FLTCDFTPTY 240 TTGFVDAFDD HSLVEPYDLY QSDFYHETSD DQLDLFLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-27 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013592508.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF738285 | 0.0 | KF738285.1 Brassica napus MYB transcription factor 95 (MYB95.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013592508.1 | 0.0 | PREDICTED: myb-related protein 308-like | ||||
TrEMBL | A0A0D3D0M8 | 0.0 | A0A0D3D0M8_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6GW03 | 0.0 | A0A3P6GW03_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g118730.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74430.1 | 1e-118 | myb domain protein 95 |