PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013592444.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 183aa    MW: 20061.3 Da    PI: 6.0045
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013592444.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.4e-182171155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    s y+GVr +k +g+Wv+eIr+p +   + r++lg+f t+e+Aa a++ a+  ++g
  XP_013592444.1 21 SVYRGVRKRK-WGKWVSEIREPGT---KNRIWLGSFETPEMAATAYDVAAFHFRG 71
                    78*****999.**********833...59*********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.9E-222180IPR016177DNA-binding domain
PfamPF008471.7E-112171IPR001471AP2/ERF domain
CDDcd000183.89E-312181No hitNo description
Gene3DG3DSA:3.30.730.101.2E-312280IPR001471AP2/ERF domain
SMARTSM003801.5E-372285IPR001471AP2/ERF domain
PROSITE profilePS5103223.2482279IPR001471AP2/ERF domain
PRINTSPR003671.6E-122334IPR001471AP2/ERF domain
PRINTSPR003671.6E-126181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MSGLSNSSNN ARYDGQAGIP SVYRGVRKRK WGKWVSEIRE PGTKNRIWLG SFETPEMAAT  60
AYDVAAFHFR GGEARLNFPE LVGSLPRPAD SSSDSIRMAA HEAALCLRTE PVESAMHVDT  120
SSSSNAGPTM VRLSPREIQA INESTLGSPT MSMHSTDDYS MGFANYMGMS AWDTYHTDSL  180
WDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-172384668ATERF1
3gcc_A1e-172384668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013592444.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013592444.11e-134PREDICTED: ethylene-responsive transcription factor ERF021
RefseqXP_013702837.11e-134ethylene-responsive transcription factor ERF021-like
SwissprotQ9C9I22e-98ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A0D3CZV41e-133A0A0D3CZV4_BRAOL; Uncharacterized protein
TrEMBLA0A3P6HDX31e-133A0A3P6HDX3_BRAOL; Uncharacterized protein
STRINGBo6g113020.11e-134(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.11e-100ERF family protein