PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013592390.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 361aa MW: 40062.8 Da PI: 8.6761

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013592390.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.6	5.1e-32	214	269	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rF++a++qLGGs++AtPk+i+++mkv+gLt+++vkSHLQkYRl+ XP_013592390.1 214 KQRRCWSPELHRRFLHALQQLGGSHVATPKQIRDHMKVDGLTNDEVKSHLQKYRLH 269 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.78E-18	211	272	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.6E-28	211	272	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.204	211	271	IPR017930	Myb domain
TIGRFAMs	TIGR01557	1.4E-26	214	269	IPR006447	Myb domain, plants
Pfam	PF00249	5.8E-8	216	267	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MMVQKMEVDH AHKMQRCHEY AEALKEEQKK IQVFQRELPL CLELVTQAIE ACKKELSVTS 60 TTSERYSEQT ASVCGGPVLE EFIQIKKSNN EENGEHESPR EVEKSDVDSK KSDWLRSTHL 120 WNHSQDPDTT VVVAKKARVV EVKPNSHNRG GFQPFQKEQK RVFSETDLHP AVKATTPAPA 180 PATTTCSTTE VGGVDKAGEE QVQKQQLQTQ TQRKQRRCWS PELHRRFLHA LQQLGGSHVA 240 TPKQIRDHMK VDGLTNDEVK SHLQKYRLHT RRPATAQGNG NSQQPQLVVV GGIWVPSPQD 300 FPSPSDVANN KGDGVYAPVT SQAPVPPQSP KRSVERSSGR CNSPAASSST NTTTTSASPV 360 S

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MMVQKMEVDH AHKMQRCHEY AEALKEEQKK IQVFQRELPL CLELVTQAIE ACKKELSVTS  60
TTSERYSEQT ASVCGGPVLE EFIQIKKSNN EENGEHESPR EVEKSDVDSK KSDWLRSTHL  120
WNHSQDPDTT VVVAKKARVV EVKPNSHNRG GFQPFQKEQK RVFSETDLHP AVKATTPAPA  180
PATTTCSTTE VGGVDKAGEE QVQKQQLQTQ TQRKQRRCWS PELHRRFLHA LQQLGGSHVA  240
TPKQIRDHMK VDGLTNDEVK SHLQKYRLHT RRPATAQGNG NSQQPQLVVV GGIWVPSPQD  300
FPSPSDVANN KGDGVYAPVT SQAPVPPQSP KRSVERSSGR CNSPAASSST NTTTTSASPV  360
S

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate homeostasis. Involved in the regulation of the developmental response of lateral roots, acquisition and/or mobilization of phosphate and expression of a subset of genes involved in phosphate sensing and signaling pathway. Is a target of the transcription factor PHR1. {ECO:0000269\|PubMed:27016098}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013592390.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced under phosphate deprivation conditions. {ECO:0000269\|PubMed:27016098}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY063886	2e-63	AY063886.1 Arabidopsis thaliana unknown protein (At1g68670) mRNA, complete cds.
GenBank	AY087993	2e-63	AY087993.1 Arabidopsis thaliana clone 40196 mRNA, complete sequence.
GenBank	AY091241	2e-63	AY091241.1 Arabidopsis thaliana unknown protein (At1g68670) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013592390.1	0.0	PREDICTED: transcription factor LUX-like
Swissprot	Q8VZS3	1e-144	HHO2_ARATH; Transcription factor HHO2
TrEMBL	A0A078HMN0	0.0	A0A078HMN0_BRANA; BnaC06g30320D protein
TrEMBL	A0A0D3CZ15	0.0	A0A0D3CZ15_BRAOL; Uncharacterized protein
STRING	Bo6g107160.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3491	28	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68670.1	1e-119	G2-like family protein

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098] Sun X, et al. The GARP/MYB-related grape transcription factor AQUILO improves cold tolerance and promotes the accumulation of raffinose family oligosaccharides. J. Exp. Bot., 2018. 69(7): p. 1749-1764 [PMID:29385617]