PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013592316.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family RAV
Protein Properties Length: 490aa    MW: 56334.2 Da    PI: 8.6903
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013592316.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.16.9e-11195243155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ++ykGV + + +g W A+I+       ++r++lg+f +a eAa+ ++ a  kl+g
  XP_013592316.1 195 TKYKGVVQQP-NGHWGAQIYAE-----HRRIWLGTFKSAAEAAASYDSASIKLRG 243
                     69********.8*********5.....5***********************9997 PP

2B3887.9e-28328428186
                     EEEE-..-HHHHTT-EE--HHH.HTT...........---.........--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkke.......esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                     f k+ltpsdv+k++rlv+pkk+a +h           +   e        +++++++d+  r+W+++++y+++s+++v+t+GW++Fv++++Lke+
  XP_013592316.1 328 FSKELTPSDVGKLNRLVIPKKHAVKHlpfisdvqkerE---EgeiggalDDVEVVFYDRAMRQWKFRYCYWRSSQSFVFTRGWNGFVREKRLKEK 419
                     889***************************98765540...15556666889******************************************* PP

                     -EEEEEE-S CS
              B3  78 DfvvFkldg 86 
                     D++vF++ +
  XP_013592316.1 420 DVIVFYHCD 428
                     ******754 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.17E-21195254No hitNo description
SuperFamilySSF541719.81E-13196253IPR016177DNA-binding domain
PROSITE profilePS5103217.675196253IPR001471AP2/ERF domain
SMARTSM003809.1E-16196261IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-16196253IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.3E-31320426IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.24E-27325428IPR015300DNA-binding pseudobarrel domain
CDDcd100177.39E-27326426No hitNo description
SMARTSM010197.6E-23328442IPR003340B3 DNA binding domain
PfamPF023627.7E-25328428IPR003340B3 DNA binding domain
PROSITE profilePS5086311.547328439IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MASTLLVPQL LSSPTSLNVA APRTYYTFNA HNTRRTVKCS SNAEPKDQQF LDLTPSPDSI  60
NTTSAEKFPI EKRRRSEIIR DRKQRGIEKP EPPNFEIGWK RTKEINLEKP KGYVIMDFLE  120
KFEGLMAREF GSKELLAKAG EIVAERAREE AEVLRDEGEV EERMVTELFR VLKLMEMDLA  180
MVKASVKEET LSERTKYKGV VQQPNGHWGA QIYAEHRRIW LGTFKSAAEA AASYDSASIK  240
LRGIDANSYR NFPWCEITTH EPAFQANYTT EAVLNMIKDC SYQHKFMEYL RRRSQMVDFA  300
NINIVAAASK QSRAGRGVQD PFSCTPLFSK ELTPSDVGKL NRLVIPKKHA VKHLPFISDV  360
QKEREEGEIG GALDDVEVVF YDRAMRQWKF RYCYWRSSQS FVFTRGWNGF VREKRLKEKD  420
VIVFYHCDVP TNVKTLQGQS NSFLMIDVDY FTETGSAPPK EVDKMVHNTS EEEMKTETKG  480
GFMLFGVRIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A7e-2332742413100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013592316.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013592316.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6881e-155RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A0D3CPX50.0A0A0D3CPX5_BRAOL; Uncharacterized protein
TrEMBLA0A3P6G5J70.0A0A3P6G5J7_BRAOL; Uncharacterized protein
STRINGBo6g024770.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-148RAV family protein