PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013592316.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | RAV | ||||||||
Protein Properties | Length: 490aa MW: 56334.2 Da PI: 8.6903 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.1 | 6.9e-11 | 195 | 243 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ykGV + + +g W A+I+ ++r++lg+f +a eAa+ ++ a kl+g XP_013592316.1 195 TKYKGVVQQP-NGHWGAQIYAE-----HRRIWLGTFKSAAEAAASYDSASIKLRG 243 69********.8*********5.....5***********************9997 PP | |||||||
2 | B3 | 88 | 7.9e-28 | 328 | 428 | 1 | 86 |
EEEE-..-HHHHTT-EE--HHH.HTT...........---.........--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkke.......esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 f k+ltpsdv+k++rlv+pkk+a +h + e +++++++d+ r+W+++++y+++s+++v+t+GW++Fv++++Lke+ XP_013592316.1 328 FSKELTPSDVGKLNRLVIPKKHAVKHlpfisdvqkerE---EgeiggalDDVEVVFYDRAMRQWKFRYCYWRSSQSFVFTRGWNGFVREKRLKEK 419 889***************************98765540...15556666889******************************************* PP -EEEEEE-S CS B3 78 DfvvFkldg 86 D++vF++ + XP_013592316.1 420 DVIVFYHCD 428 ******754 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.17E-21 | 195 | 254 | No hit | No description |
SuperFamily | SSF54171 | 9.81E-13 | 196 | 253 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.675 | 196 | 253 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.1E-16 | 196 | 261 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.1E-16 | 196 | 253 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 3.3E-31 | 320 | 426 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.24E-27 | 325 | 428 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.39E-27 | 326 | 426 | No hit | No description |
SMART | SM01019 | 7.6E-23 | 328 | 442 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.7E-25 | 328 | 428 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.547 | 328 | 439 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 490 aa Download sequence Send to blast |
MASTLLVPQL LSSPTSLNVA APRTYYTFNA HNTRRTVKCS SNAEPKDQQF LDLTPSPDSI 60 NTTSAEKFPI EKRRRSEIIR DRKQRGIEKP EPPNFEIGWK RTKEINLEKP KGYVIMDFLE 120 KFEGLMAREF GSKELLAKAG EIVAERAREE AEVLRDEGEV EERMVTELFR VLKLMEMDLA 180 MVKASVKEET LSERTKYKGV VQQPNGHWGA QIYAEHRRIW LGTFKSAAEA AASYDSASIK 240 LRGIDANSYR NFPWCEITTH EPAFQANYTT EAVLNMIKDC SYQHKFMEYL RRRSQMVDFA 300 NINIVAAASK QSRAGRGVQD PFSCTPLFSK ELTPSDVGKL NRLVIPKKHA VKHLPFISDV 360 QKEREEGEIG GALDDVEVVF YDRAMRQWKF RYCYWRSSQS FVFTRGWNGF VREKRLKEKD 420 VIVFYHCDVP TNVKTLQGQS NSFLMIDVDY FTETGSAPPK EVDKMVHNTS EEEMKTETKG 480 GFMLFGVRIQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 7e-23 | 327 | 424 | 13 | 100 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013592316.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013592316.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like | ||||
Swissprot | Q9C688 | 1e-155 | RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120 | ||||
TrEMBL | A0A0D3CPX5 | 0.0 | A0A0D3CPX5_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6G5J7 | 0.0 | A0A3P6G5J7_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g024770.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1705 | 27 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51120.1 | 1e-148 | RAV family protein |