PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013592305.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 314aa MW: 34791.1 Da PI: 6.0931

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013592305.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	47.7	2.8e-15	49	98	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lre++P++ +K + a+ L ++++Y+++Lq XP_013592305.1 49 RSKHSVTEQRRRSKINERFQILREIIPNS----EQKRDTASFLLEVIDYVQYLQ 98 899***********************8....79****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.93E-18	45	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.9E-22	46	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.069	47	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.97E-14	49	102	No hit	No description
Pfam	PF00010	1.2E-12	49	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.7E-11	53	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MRTGKANQEE DDYGEEDFGS KREGPSSNHS NSAAASRDVK ENDKASAIRS KHSVTEQRRR 60 SKINERFQIL REIIPNSEQK RDTASFLLEV IDYVQYLQEK VQKYEGSYPG WSQEPTKLTP 120 WRNNHWRVQS LANGSVPVIP FPGKFEENSV AFSGPAVAEM QNPVESDQGR TAVYKPIDSQ 180 PEFDDNKELP PVQPIHHPLV HGEQANNECP ATSDGAGQSN NDLVVEGGTI SISTAYSHEL 240 LSSLTQALQN AGVDLSHAKL SVQIDLGKRA NQGLTHNDPS NKNPFSSHTE GATRSRNPSV 300 EGESEHAHKR MKTL

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00219	DAP	Transfer from AT1G69010	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013592305.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189458	1e-153	AC189458.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073F16, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013592305.1	0.0	PREDICTED: transcription factor BIM2
Refseq	XP_013702654.1	0.0	transcription factor BIM2-like
Swissprot	Q9CAA4	1e-162	BIM2_ARATH; Transcription factor BIM2
TrEMBL	A0A0D3CZ53	0.0	A0A0D3CZ53_BRAOL; Uncharacterized protein
STRING	Bo6g108530.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5987	27	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	1e-161	BES1-interacting Myc-like protein 2

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]