PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013592265.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 535aa    MW: 60289.6 Da    PI: 5.167
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013592265.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like826.6e-26216270155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r++W+ eLH++Fv+av+q+G  +kA Pk+il+lm+++ Lt+e+v+SHLQkYRl
  XP_013592265.1 216 KARVVWSYELHQKFVNAVNQIGCDHKAGPKKILDLMNIPWLTRENVASHLQKYRL 270
                     68****************************************************8 PP
2Response_reg55.53.2e-196414626107
                     EEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHH CS
    Response_reg  26 vaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeel 107
                     v+++  ++eal+ll+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ Ga d+l Kp+ ++el
  XP_013592265.1  64 VTTCGLAREALRLLRERKdgFDIVISDVNMPDMDGFKLLEHVGLEL-DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 146
                     77888899******999999**********************5543.7*******************************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.8E-389161No hitNo description
SMARTSM004482.2E-1810150IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011036.72611154IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.05E-2513154No hitNo description
SuperFamilySSF521726.12E-2463159IPR011006CheY-like superfamily
PfamPF000725.1E-1664147IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:1.10.10.602.2E-27213275IPR009057Homeodomain-like
SuperFamilySSF466893.58E-16214274IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-22216270IPR006447Myb domain, plants
PfamPF002491.9E-7218269IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MEKGFSPVGL RVLVVDDDPT WLKILEKMLK KCSYEGSLLL FLCFYTLGVH LLNFLCFCFN  60
PLAVTTCGLA REALRLLRER KDGFDIVISD VNMPDMDGFK LLEHVGLELD LPVIMMSVDG  120
ETSRVMKGVQ HGACDYLLKP IRMKELKIIW QHVLRKKLQE VRDIEGCCYD VGADWFTQAQ  180
FLGGGEDVSF GKKRKDFDFE KKLFQDESDQ SSSSKKARVV WSYELHQKFV NAVNQIGCDH  240
KAGPKKILDL MNIPWLTREN VASHLQKYRL YLSRLEKGKE IKCYSGGVKN MDSPPKDAEI  300
NSGHQSPGKS SSYAFLKATE TDPKQLAPAS VSDPTSGVHM PPKAKKTRIG YDPPNSSGVF  360
DSLLPWNDVP DPLESKPPIL YENSFLQQQP LPSQSSYVAN SAPSLMQEEM KPSYVNEDEF  420
LMPQDKNSTV ILQDMDLSAP FSSNATSNTD SIPGSLNWEL PEAHHSGSLD TDLDFTWLHG  480
EHFFANSGLQ NFQFQDYTSS TSLLSEPPPH LWYGNDRLPD PDEYTLMVDQ GLFIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-18212275163ARR10-B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in roots and stems. {ECO:0000269|PubMed:15173562}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250, ECO:0000269|PubMed:12610214}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013592265.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013592265.10.0PREDICTED: two-component response regulator ARR11-like isoform X1
SwissprotQ9FXD60.0ARR11_ARATH; Two-component response regulator ARR11
TrEMBLA0A0D3CY150.0A0A0D3CY15_BRAOL; Two-component response regulator
STRINGBo6g098710.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80662740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.10.0response regulator 11
Publications ? help Back to Top
  1. Zwack PJ, et al.
    Cytokinin Response Factor 6 Represses Cytokinin-Associated Genes during Oxidative Stress.
    Plant Physiol., 2016. 172(2): p. 1249-1258
    [PMID:27550996]
  2. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]