PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013592175.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 409aa    MW: 44176.8 Da    PI: 9.634
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013592175.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_120.11.4e-06321387560
                     CHHHCHHHHHHHHHHHHHHHH...........HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKk...........aeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
                     +r+rr++kNRe+A rsR+RK+           a++ eLe +v++L++eN++L+ +  ++ ++ ++ +
  XP_013592175.1 321 RRQRRMIKNRESAARSRARKQmfsadqtmywnAYTVELEAEVAKLKEENEELQRKQAKIMEMQKNQE 387
                     79******************95555555555569******************999888888876655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.7E-12312379No hitNo description
SMARTSM003382.2E-8317392IPR004827Basic-leucine zipper domain
PfamPF077161.2E-4320346IPR004827Basic-leucine zipper domain
CDDcd147071.55E-24321386No hitNo description
SuperFamilySSF579593.38E-5321381No hitNo description
PROSITE patternPS000360324339IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0010255Biological Processglucose mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MLSAFIKISW NLCYMTSSGS RSNMNFKNNN NNMGNEPPGD GSGGAALTRQ GSIYSLTFDE  60
FQSSLGKDFG SMNMDELLKN IWTAEETQAM AVAASTSGVI PLAGGGQEGL PLQRQGSLTL  120
PRTLSTKTVD QVWKDLSKDG GGGTNLTQSQ SQQTLGEVTL EEFLVRAGVV REEAQVAAKD  180
ANTGFSVQAS PQVVPGLMGN LGAETVNHMQ VQGSSLPLNV NGARSTYQQH QPIMPKQPGF  240
GYGTHVGPGI RGGLMGLGDQ SLNMGLVQGV VGAAVSPVTP VSADGIGKNN GDSSSLSPSP  300
YMFNGGVRGR KSVTVEKVVE RRQRRMIKNR ESAARSRARK QMFSADQTMY WNAYTVELEA  360
EVAKLKEENE ELQRKQAKIM EMQKNQEMEM MNIQVGAKKR LRRTESGPW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1333341ARSRARKQM
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves, flowers and siliques but not in seeds. {ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16284313}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16284313, ECO:0000269|PubMed:16463099}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00186DAPTransfer from AT1G45249Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013592175.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269|PubMed:10636868, ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16284313, ECO:0000269|PubMed:16463099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHE6165260.0HE616526.1 Brassica napus abf2 gene for abscisic acid responsive elements-binding factor 2, exons 1-4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013592175.10.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5 isoform X4
SwissprotQ9M7Q40.0AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBLA0A3N6PRI80.0A0A3N6PRI8_BRACR; Uncharacterized protein
STRINGBo6g006970.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73427129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G45249.31e-157abscisic acid responsive elements-binding factor 2
Publications ? help Back to Top
  1. Gao S, et al.
    ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis.
    Mol Plant, 2016. 9(9): p. 1272-1285
    [PMID:27373216]
  2. Seok HY, et al.
    Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response.
    Planta, 2017. 245(2): p. 329-341
    [PMID:27770200]