PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013592174.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 369aa MW: 39476.5 Da PI: 9.8395

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013592174.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	21.8	4e-07	321	342	5	26
CHHHCHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKka 26 +r+rr++kNRe+A rsR+RK++ XP_013592174.1 321 RRQRRMIKNRESAARSRARKQM 342 79******************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.1E-5	312	342	No hit	No description
Pfam	PF07716	1.3E-4	320	346	IPR004827	Basic-leucine zipper domain
CDD	cd14707	4.02E-13	321	341	No hit	No description
PROSITE pattern	PS00036	0	324	339	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009651	Biological Process	response to salt stress
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0010255	Biological Process	glucose mediated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0000976	Molecular Function	transcription regulatory region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MLSAFIKISW NLCYMTSSGS RSNMNFKNNN NNMGNEPPGD GSGGAALTRQ GSIYSLTFDE 60 FQSSLGKDFG SMNMDELLKN IWTAEETQAM AVAASTSGVI PLAGGGQEGL PLQRQGSLTL 120 PRTLSTKTVD QVWKDLSKDG GGGTNLTQSQ SQQTLGEVTL EEFLVRAGVV REEAQVAAKD 180 ANTGFSVQAS PQVVPGLMGN LGAETVNHMQ VQGSSLPLNV NGARSTYQQH QPIMPKQPGF 240 GYGTHVGPGI RGGLMGLGDQ SLNMGLVQGV VGAAVSPVTP VSADGIGKNN GDSSSLSPSP 300 YMFNGGVRGR KSVTVEKVVE RRQRRMIKNR ESAARSRARK QMFSADQTMY WNVIFFSFLF 360 GKVKPDWSY

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MLSAFIKISW NLCYMTSSGS RSNMNFKNNN NNMGNEPPGD GSGGAALTRQ GSIYSLTFDE  60
FQSSLGKDFG SMNMDELLKN IWTAEETQAM AVAASTSGVI PLAGGGQEGL PLQRQGSLTL  120
PRTLSTKTVD QVWKDLSKDG GGGTNLTQSQ SQQTLGEVTL EEFLVRAGVV REEAQVAAKD  180
ANTGFSVQAS PQVVPGLMGN LGAETVNHMQ VQGSSLPLNV NGARSTYQQH QPIMPKQPGF  240
GYGTHVGPGI RGGLMGLGDQ SLNMGLVQGV VGAAVSPVTP VSADGIGKNN GDSSSLSPSP  300
YMFNGGVRGR KSVTVEKVVE RRQRRMIKNR ESAARSRARK QMFSADQTMY WNVIFFSFLF  360
GKVKPDWSY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	333	341	ARSRARKQM

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, leaves, flowers and siliques but not in seeds. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00186	DAP	Transfer from AT1G45249	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013592174.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HE616526	0.0	HE616526.1 Brassica napus abf2 gene for abscisic acid responsive elements-binding factor 2, exons 1-4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013592174.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5 isoform X3
Swissprot	Q9M7Q4	1e-155	AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBL	A0A3N6PRI8	0.0	A0A3N6PRI8_BRACR; Uncharacterized protein
STRING	Bo6g006970.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G45249.3	1e-146	abscisic acid responsive elements-binding factor 2

Publications ? help Back to Top
Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Seok HY, et al. Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response. Planta, 2017. 245(2): p. 329-341 [PMID:27770200]