PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013592173.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 375aa    MW: 40222.3 Da    PI: 9.7252
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013592173.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_146.77.1e-15298353560
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
                     +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++eN++L+ +  ++ ++ ++ +
  XP_013592173.1 298 RRQRRMIKNRESAARSRARKQAYTVELEAEVAKLKEENEELQRKQAKIMEMQKNQE 353
                     79***************************************999888888876655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.8E-13294358IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.243296347IPR004827Basic-leucine zipper domain
PfamPF001709.7E-13298354IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.7E-14298347No hitNo description
CDDcd147071.67E-27298352No hitNo description
SuperFamilySSF579596.88E-11298347No hitNo description
PROSITE patternPS000360301316IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0010255Biological Processglucose mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MNFKNNNNNM GNEPPGDGSG GAALTRQGSI YSLTFDEFQS SLGKDFGSMN MDELLKNIWT  60
AEETQAMAVA ASTSGVIPLA GGGQEGLPLQ RQGSLTLPRT LSTKTVDQVW KDLSKDGGGG  120
TNLTQSQSQQ TLGEVTLEEF LVRAGVVREE AQVAAKDANT GFSVQASPQV VPGLMGNLGA  180
ETVNHMQVQG SSLPLNVNGA RSTYQQHQPI MPKQPGFGYG THVGPGIRGG LMGLGDQSLN  240
MGLVQGVVGA AVSPVTPVSA DGIGKNNGDS SSLSPSPYMF NGGVRGRKSV TVEKVVERRQ  300
RRMIKNRESA ARSRARKQAY TVELEAEVAK LKEENEELQR KQAKIMEMQK NQEMEMMNIQ  360
VGAKKRLRRT ESGPW
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves, flowers and siliques but not in seeds. {ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16284313}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16284313, ECO:0000269|PubMed:16463099}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00186DAPTransfer from AT1G45249Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013592173.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269|PubMed:10636868, ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16284313, ECO:0000269|PubMed:16463099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHE6165270.0HE616527.1 Brassica napus mRNA for abscisic acid responsive elements-binding factor 2 (abf2 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013592172.10.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5 isoform X1
RefseqXP_013592173.10.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5 isoform X2
SwissprotQ9M7Q40.0AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBLA0A0D3CNT10.0A0A0D3CNT1_BRAOL; Uncharacterized protein
STRINGBo6g006970.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G45249.11e-149abscisic acid responsive elements-binding factor 2
Publications ? help Back to Top
  1. Gao S, et al.
    ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis.
    Mol Plant, 2016. 9(9): p. 1272-1285
    [PMID:27373216]
  2. Seok HY, et al.
    Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response.
    Planta, 2017. 245(2): p. 329-341
    [PMID:27770200]