PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013592125.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 533aa    MW: 57595.5 Da    PI: 8.2524
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013592125.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY955.3e-30215274159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+++v+r+ +d +++++tYeg+Hnh+
  XP_013592125.1 215 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApGCPVRRQVQRCVDDMSILITTYEGTHNHP 274
                     58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-31200276IPR003657WRKY domain
SuperFamilySSF1182902.35E-27208276IPR003657WRKY domain
PROSITE profilePS5081128.851210276IPR003657WRKY domain
SMARTSM007747.6E-37215275IPR003657WRKY domain
PfamPF031061.6E-26216274IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MEVLKKLPTS DSIVKDEVAG SDGGIQESRK VSHELESANV EMREMKEENE KLKVMLEHIE  60
SDYKSLRLRY LNKVQQKSSA KPVPDNKNDH LNAEFLSSSD QEREFVSLSL GRRSSNSPAN  120
SIANKEEKTK LICLGAKEEE ELTNAGLALG PAVGLAKENR AISSLEYSSS EEAPAMNKVT  180
GKRSSPSGGA DDNSQQNLAK RSRVCVRARC DTLTMNDGCQ WRKYGQKVAK GNPCPRAYYR  240
CTVAPGCPVR RQVQRCVDDM SILITTYEGT HNHPLPLTAT AMASTTAAAA SMLLSGSSTS  300
GLDTEMIKNG MNFKLYDNNS RFINKPTVLS PLHPTVTLDL TTPMPKPSSS PYSLNFNTFS  360
SLQRFPSTSL NFSASSSSSD STSTINIPTI WGSGYASCSP ITDNKVHTGG PSFPNIGKNL  420
PQNPSLTETL TKALTSDPSF HSVIAQAIST MVGSGNGDQQ SARTLNSQQA AADSNNQNKG  480
CEGHFSSLLM SNMANPGMLS TLNLPSSELP FTLFTTSSSS SKPSFSNEEK KRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21202276174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013592125.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013592125.10.0PREDICTED: probable WRKY transcription factor 72
RefseqXP_013729695.10.0probable WRKY transcription factor 72
SwissprotQ9LXG81e-163WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBLA0A3P6F7E00.0A0A3P6F7E0_BRAOL; Uncharacterized protein
STRINGBo1g158770.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29592868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.11e-141WRKY DNA-binding protein 72