PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013592077.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 328aa MW: 36110.4 Da PI: 6.676 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.2 | 1.4e-20 | 147 | 196 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+g XP_013592077.1 147 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 196 59******9.**********955...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.11E-34 | 146 | 206 | No hit | No description |
PROSITE profile | PS51032 | 23.169 | 147 | 204 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-37 | 147 | 210 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.1E-32 | 147 | 205 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.55E-23 | 147 | 205 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.0E-11 | 148 | 159 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.2E-14 | 148 | 196 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-11 | 170 | 186 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MEAAMNMYNS ITFQQPDSFG GGELMEALVP YISSVSNCSP YLASAFIQPA ASAFPPSLPT 60 CPAYYPEDYS TFMTQPFTYG SDLHQTGSLT GLNHLSSSQT HPLPPMHHQS HNNTFSNLLS 120 PKPLLMKQTG ATGSCFAYGA PAKPTKLYRG VRQRHWGKWV AEIRLPRNRT RLWLGTFDTA 180 EEAALAYDKA AYKLRGDFAR LNFPNLRHNG SHIGGEFGEY KPLHSTVDAK LEAICQSMAE 240 AEKQGKTTTK ASKKRASKTV SSPEKVKAED NSNSVGGSPP VTEFVESAGS SPLSELTFAD 300 TEELPQWNET FSLEKYPSYE IDWDSILS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-21 | 146 | 204 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in roots and leaves. Also detected in flowers and stems. {ECO:0000269|PubMed:9192694}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013592077.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189414 | 0.0 | AC189414.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB061K11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013592077.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-4 | ||||
Swissprot | Q8H1E4 | 1e-159 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | A0A0D3D1H8 | 0.0 | A0A0D3D1H8_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g121730.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2716 | 26 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 1e-140 | related to AP2 4 |
Publications ? help Back to Top | |||
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