PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013592020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 302aa MW: 33552.3 Da PI: 4.7749 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 46.2 | 1.1e-14 | 107 | 154 | 2 | 53 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 + GVr++k +g+W+AeIr+p + r +lg+f t+e A++a+ rk++ XP_013592020.1 107 KPVGVRQRK-WGKWAAEIRHPI----TkNRTWLGTFETEEAAHQAYKDKRKEY 154 789*****9.**********73....359*********99*******999998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 2.1E-40 | 5 | 266 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
CDD | cd00018 | 9.36E-18 | 106 | 147 | No hit | No description |
SMART | SM00380 | 1.8E-12 | 107 | 167 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.779 | 107 | 164 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.8E-9 | 107 | 155 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-5 | 108 | 119 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.4E-14 | 109 | 159 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.2E-18 | 110 | 149 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-5 | 130 | 146 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 302 aa Download sequence Send to blast |
MVGIREQLSL SSTKKPKRCN PQEKTQQSLR KVRILVNDPY ATDDSSSDEG ETKMRRIVRV 60 VNFPPLVESA AAPRVEPTSV SSSQDSTKTT SKKAAAAGAS RPRLSKKPVG VRQRKWGKWA 120 AEIRHPITKN RTWLGTFETE EAAHQAYKDK RKEYDALLAT SNDSASVSET SQCSRSSPLE 180 QDTSASTPAL KEEIKITTTT AGVDSSSKEV LFGFNFAELP IPDLGFFAEE GQMVGDLGFF 240 TEDHDQLNLD CLFTDDQFDD FSMLGFEDSG PSELPDWDFP DVEFESSFFF ADQHIPLKSF 300 VA |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013592020.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013592018.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF118 | ||||
Refseq | XP_013592019.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF118 | ||||
Refseq | XP_013592020.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF118 | ||||
Swissprot | Q9CA27 | 1e-80 | EF118_ARATH; Ethylene-responsive transcription factor ERF118 | ||||
TrEMBL | A0A0D3CYZ8 | 0.0 | A0A0D3CYZ8_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6FZF4 | 0.0 | A0A3P6FZF4_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g106990.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68550.2 | 2e-75 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|