PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013592004.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 790aa MW: 88222 Da PI: 6.3578

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013592004.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93.8	1.2e-29	528	579	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ XP_013592004.1 528 AEKNITLDVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGIQRWPSRKIKKV 579 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.052	516	599	IPR003035	RWP-RK domain
Pfam	PF02042	1.2E-25	531	579	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.59E-22	682	778	No hit	No description
PROSITE profile	PS51745	29.03	692	775	IPR000270	PB1 domain
SMART	SM00666	9.9E-25	692	775	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	4.1E-19	693	772	No hit	No description
CDD	cd06407	1.90E-35	693	769	No hit	No description
Pfam	PF00564	4.5E-18	693	773	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 790 aa Download sequence Send to blast
MDSSFMDGLL LDGCWLETTT TDASEFPNFS PSTSISPFDP SSFMWSPQQD NTAAISSSTL 60 SHMYGQGFAE RSSLEDLSTL NRRLWIGPSG GGHGSSVMER LVQAVKHIKD FTSERGDSLI 120 QLWVPVDRGG KRVLTTKEQP FSHDPMSQRL AHYREISENY QFSAEQEDSS SKDLVGLPGR 180 VFLGQVPEWT PDVRFFKNEE YPRVQHAQDC DVRGTLAIPV FEQGSKTCIG VIEVVMTTQM 240 VKLSPELDSI CRALQAVDLR STEVPVSPSL KGPDFSYQAA LPEIRNLLRC ACETHKLPLA 300 QTWMSCLKQS KTGCRHNDHN YIHCVSTIDD ACYVGDPTVR EFHEACSEHH LLKGQGVVGE 360 AFLTNGPCFS SDVSSYKKSE YPLSHHATMF GLHGTVAIRL RCIHTGSADF VLEFFLPKDC 420 RDIEEQRRML NALSTIMAHV PRSLRTVTEK ELEEEGDQMV SEVETLPKIE ETCEVHGSNS 480 NPQHVGLAVD GELGFDYGKG VSVVNENSTF SSGGGGSSRV TEKKKTKAEK NITLDVLRQY 540 FAGSLKDAAK SIGVCPTTLK RICRQHGIQR WPSRKIKKVG HSLQKIQRVI DSVQGVSGHH 600 LPIGSFYANF PNLASSQEQQ SKQTTFLPPS SHSQPAKSSS PGSSCSHTSS CSSETQVNKE 660 DPMNKAREDT RSFKQTQTTQ LSPSTSSQDD DFLRLKVSYE EEKIRFRMRN SRRLKDLLWE 720 IAKRFGIEDV SRYDLKYLDE DNEWVLLRCD DDVEECVDVC RSFPGETIKL LLQLSSQHLQ 780 ERSSISGSLS

Sequence ? help Back to Top

Protein Sequence Length: 790 aa Download sequence Send to blast

MDSSFMDGLL LDGCWLETTT TDASEFPNFS PSTSISPFDP SSFMWSPQQD NTAAISSSTL  60
SHMYGQGFAE RSSLEDLSTL NRRLWIGPSG GGHGSSVMER LVQAVKHIKD FTSERGDSLI  120
QLWVPVDRGG KRVLTTKEQP FSHDPMSQRL AHYREISENY QFSAEQEDSS SKDLVGLPGR  180
VFLGQVPEWT PDVRFFKNEE YPRVQHAQDC DVRGTLAIPV FEQGSKTCIG VIEVVMTTQM  240
VKLSPELDSI CRALQAVDLR STEVPVSPSL KGPDFSYQAA LPEIRNLLRC ACETHKLPLA  300
QTWMSCLKQS KTGCRHNDHN YIHCVSTIDD ACYVGDPTVR EFHEACSEHH LLKGQGVVGE  360
AFLTNGPCFS SDVSSYKKSE YPLSHHATMF GLHGTVAIRL RCIHTGSADF VLEFFLPKDC  420
RDIEEQRRML NALSTIMAHV PRSLRTVTEK ELEEEGDQMV SEVETLPKIE ETCEVHGSNS  480
NPQHVGLAVD GELGFDYGKG VSVVNENSTF SSGGGGSSRV TEKKKTKAEK NITLDVLRQY  540
FAGSLKDAAK SIGVCPTTLK RICRQHGIQR WPSRKIKKVG HSLQKIQRVI DSVQGVSGHH  600
LPIGSFYANF PNLASSQEQQ SKQTTFLPPS SHSQPAKSSS PGSSCSHTSS CSSETQVNKE  660
DPMNKAREDT RSFKQTQTTQ LSPSTSSQDD DFLRLKVSYE EEKIRFRMRN SRRLKDLLWE  720
IAKRFGIEDV SRYDLKYLDE DNEWVLLRCD DDVEECVDVC RSFPGETIKL LLQLSSQHLQ  780
ERSSISGSLS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013592004.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013592002.1	0.0	PREDICTED: protein NLP5 isoform X1
Refseq	XP_013592003.1	0.0	PREDICTED: protein NLP5 isoform X1
Swissprot	Q9SFW8	0.0	NLP5_ARATH; Protein NLP5
TrEMBL	A0A0D3D143	0.0	A0A0D3D143_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6GWI6	0.0	A0A3P6GWI6_BRAOL; Uncharacterized protein
STRING	Bo6g120380.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	0.0	Nin-like family protein