PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013592002.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 802aa MW: 89620.6 Da PI: 6.3335

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013592002.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93.8	1.3e-29	540	591	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ XP_013592002.1 540 AEKNITLDVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGIQRWPSRKIKKV 591 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.052	528	611	IPR003035	RWP-RK domain
Pfam	PF02042	1.2E-25	543	591	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.62E-22	694	790	No hit	No description
PROSITE profile	PS51745	29.03	704	787	IPR000270	PB1 domain
SMART	SM00666	9.9E-25	704	787	IPR000270	PB1 domain
CDD	cd06407	1.35E-35	705	781	No hit	No description
Pfam	PF00564	4.6E-18	705	785	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	4.2E-19	705	784	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 802 aa Download sequence Send to blast
MNNNYHLPMD PAMDSSFMDG LLLDGCWLET TTTDASEFPN FSPSTSISPF DPSSFMWSPQ 60 QDNTAAISSS TLSHMYGQGF AERSSLEDLS TLNRRLWIGP SGGGHGSSVM ERLVQAVKHI 120 KDFTSERGDS LIQLWVPVDR GGKRVLTTKE QPFSHDPMSQ RLAHYREISE NYQFSAEQED 180 SSSKDLVGLP GRVFLGQVPE WTPDVRFFKN EEYPRVQHAQ DCDVRGTLAI PVFEQGSKTC 240 IGVIEVVMTT QMVKLSPELD SICRALQAVD LRSTEVPVSP SLKGPDFSYQ AALPEIRNLL 300 RCACETHKLP LAQTWMSCLK QSKTGCRHND HNYIHCVSTI DDACYVGDPT VREFHEACSE 360 HHLLKGQGVV GEAFLTNGPC FSSDVSSYKK SEYPLSHHAT MFGLHGTVAI RLRCIHTGSA 420 DFVLEFFLPK DCRDIEEQRR MLNALSTIMA HVPRSLRTVT EKELEEEGDQ MVSEVETLPK 480 IEETCEVHGS NSNPQHVGLA VDGELGFDYG KGVSVVNENS TFSSGGGGSS RVTEKKKTKA 540 EKNITLDVLR QYFAGSLKDA AKSIGVCPTT LKRICRQHGI QRWPSRKIKK VGHSLQKIQR 600 VIDSVQGVSG HHLPIGSFYA NFPNLASSQE QQSKQTTFLP PSSHSQPAKS SSPGSSCSHT 660 SSCSSETQVN KEDPMNKARE DTRSFKQTQT TQLSPSTSSQ DDDFLRLKVS YEEEKIRFRM 720 RNSRRLKDLL WEIAKRFGIE DVSRYDLKYL DEDNEWVLLR CDDDVEECVD VCRSFPGETI 780 KLLLQLSSQH LQERSSISGS LS

Sequence ? help Back to Top

Protein Sequence Length: 802 aa Download sequence Send to blast

MNNNYHLPMD PAMDSSFMDG LLLDGCWLET TTTDASEFPN FSPSTSISPF DPSSFMWSPQ  60
QDNTAAISSS TLSHMYGQGF AERSSLEDLS TLNRRLWIGP SGGGHGSSVM ERLVQAVKHI  120
KDFTSERGDS LIQLWVPVDR GGKRVLTTKE QPFSHDPMSQ RLAHYREISE NYQFSAEQED  180
SSSKDLVGLP GRVFLGQVPE WTPDVRFFKN EEYPRVQHAQ DCDVRGTLAI PVFEQGSKTC  240
IGVIEVVMTT QMVKLSPELD SICRALQAVD LRSTEVPVSP SLKGPDFSYQ AALPEIRNLL  300
RCACETHKLP LAQTWMSCLK QSKTGCRHND HNYIHCVSTI DDACYVGDPT VREFHEACSE  360
HHLLKGQGVV GEAFLTNGPC FSSDVSSYKK SEYPLSHHAT MFGLHGTVAI RLRCIHTGSA  420
DFVLEFFLPK DCRDIEEQRR MLNALSTIMA HVPRSLRTVT EKELEEEGDQ MVSEVETLPK  480
IEETCEVHGS NSNPQHVGLA VDGELGFDYG KGVSVVNENS TFSSGGGGSS RVTEKKKTKA  540
EKNITLDVLR QYFAGSLKDA AKSIGVCPTT LKRICRQHGI QRWPSRKIKK VGHSLQKIQR  600
VIDSVQGVSG HHLPIGSFYA NFPNLASSQE QQSKQTTFLP PSSHSQPAKS SSPGSSCSHT  660
SSCSSETQVN KEDPMNKARE DTRSFKQTQT TQLSPSTSSQ DDDFLRLKVS YEEEKIRFRM  720
RNSRRLKDLL WEIAKRFGIE DVSRYDLKYL DEDNEWVLLR CDDDVEECVD VCRSFPGETI  780
KLLLQLSSQH LQERSSISGS LS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013592002.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013592002.1	0.0	PREDICTED: protein NLP5 isoform X1
Refseq	XP_013592003.1	0.0	PREDICTED: protein NLP5 isoform X1
Swissprot	Q9SFW8	0.0	NLP5_ARATH; Protein NLP5
TrEMBL	A0A0D3D143	0.0	A0A0D3D143_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6GWI6	0.0	A0A3P6GWI6_BRAOL; Uncharacterized protein
STRING	Bo6g120380.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3461	26	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	0.0	Nin-like family protein