PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013591974.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 608aa    MW: 68328.8 Da    PI: 6.8997
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013591974.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix91.11.2e-2850134187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++qe+laL+++r++m+ ++r+++ k+plWeevs+km+e g+ r++k+Ckek+en+ k++k++keg+ ++++++  t+++fdqlea
  XP_013591974.1  50 RWPRQETLALLKIRSDMGIAFRDASVKGPLWEEVSRKMAELGYIRNAKKCKEKFENVYKYHKRTKEGRTGKSEGK--TYRFFDQLEA 134
                     8********************************************************************975544..6*******85 PP
2trihelix104.29.5e-33406491187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+k e+ aLi++r++++++++++  k+plWee+s+ m++ gf+r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  XP_013591974.1 406 RWPKVEIEALIKLRTNLDSKYQENGPKGPLWEEISAGMKRLGFNRNSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 491
                     8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.1247109IPR001005SANT/Myb domain
CDDcd122031.04E-2149114No hitNo description
PROSITE profilePS500906.95749107IPR017877Myb-like domain
PfamPF138376.0E-1849135No hitNo description
PROSITE profilePS500907.155399463IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.8E-4403462IPR009057Homeodomain-like
SMARTSM007170.0023403465IPR001005SANT/Myb domain
PfamPF138374.1E-22405492No hitNo description
CDDcd122033.13E-26406470No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MMQLGGTTTT AATSAAPPPS NDSAAAAAAA TVGAFEVSEE MNDRGFGGNR WPRQETLALL  60
KIRSDMGIAF RDASVKGPLW EEVSRKMAEL GYIRNAKKCK EKFENVYKYH KRTKEGRTGK  120
SEGKTYRFFD QLEALETRPT SSSIHHQQQQ QPPPQTQPQP LQPQPPLRPH NNNSPMFSTS  180
PPVTTITPQI TNTTFPPYTQ PANVPSFPNI SGDFLSDNST SSSRSTSSDV DAGDGTTTTR  240
KKKRKRKWKE FFERLTRQVV DKQEELQRKF LEAVEKREDE RLVREESWRV QEIARINRER  300
DILAQERSMS AAKDAAVMAF LQKLSEKPNP QGQSIIPQPQ PQPQQAPSQM QVNNNNNQQT  360
PQPPPPPPTQ PTQPVTPTVD TSKTDNGDQN MTPVSASAAG AVSSSRWPKV EIEALIKLRT  420
NLDSKYQENG PKGPLWEEIS AGMKRLGFNR NSKRCKEKWE NINKYFKKVK ESNKKRPEDS  480
KTCPYFHQLD ALYRERNKFH TNNNVIASSS STSGLVKPDN SVPLMVQPEQ QWPPAMATTT  540
VTSTVAATAQ PDQHPPPQPL DKNFDDEEGT DGEEYDDEED YEENEEEEGG EFELMPSNNN  600
NNKPTNNM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240246KKKRKRK
2241246KKRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013591974.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892030.0AC189203.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB006H21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013591974.10.0PREDICTED: trihelix transcription factor GT-2-like
SwissprotQ391171e-142TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A0D3CWA40.0A0A0D3CWA4_BRAOL; Uncharacterized protein
TrEMBLA0A3P6GTS20.0A0A3P6GTS2_BRAOL; Uncharacterized protein
STRINGBo6g083690.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48492553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.10.0Trihelix family protein