PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013591925.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 584aa    MW: 64462.7 Da    PI: 6.0806
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013591925.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.38.6e-09490538348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E   lv++v ++G g W+ I +       +Rt  ++k++w+++l
   XP_013591925.1 490 AWTLSEVTTLVEGVSKYGAGKWSEIKKLSFsshSHRTSVDLKDKWRNLL 538
                      7**************************9999****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.501483542IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-13485544IPR009057Homeodomain-like
SMARTSM007174.0E-9487540IPR001005SANT/Myb domain
CDDcd116601.73E-21489539No hitNo description
SuperFamilySSF466892.51E-16489548IPR009057Homeodomain-like
PfamPF139218.2E-7491546No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MGTVVGTVED RREMFDVSAQ TRITPFSSTN QIGNPVAYKL VRVAGDGRLV PATDEEILEV  60
NETDVHSASD ACQSLGFLPT EGSPFRLSQL KECSEGLLRS DNVEPSTDQY SEEFLQKVEQ  120
DERLVMVSTP PDANIQCCNE NNMFDEDQVH HEPLPFSSDV QNGCDVNQSN TVEPSSPKET  180
ALPAAAASQK PDFALVRGEI CLDNLPIKAL QETFRATFGR ETTVKDKTWL KRRITMGLTK  240
SFDVPTTNLT IKDNKLVGNQ VKSNDVSDDV RATNVKEAPS SSAYHVNGHS KEASAHSLGV  300
NHYWATEDFS CEERAAKRVR KPTRRYIEEL SKTDDKSVFP SKDQRLSEKS EVRSMSVSSG  360
KRVTVTRVVP LGGSEVEVPY VSHVRRSRPR ENFMALMECH TSCLEAKASG GESNLLNSEA  420
VSPGSVVKSA SGPIQNELAT SHNNTNEENI LTEADQDIEP DSSGNSSDDY NNTGAPMMQG  480
GGVRRKHHRA WTLSEVTTLV EGVSKYGAGK WSEIKKLSFS SHSHRTSVDL KDKWRNLLRA  540
SFAQSPSNNM GSFKKHGSMH IPVEILLQVR ELAEKQSLVP PNHR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013591925.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895070.0AC189507.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB088E11, complete sequence.
GenBankAC1896070.0AC189607.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH031P22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013591925.10.0PREDICTED: uncharacterized protein LOC106300347 isoform X4
TrEMBLM4DHR70.0M4DHR7_BRARP; Uncharacterized protein
STRINGBra016044.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.10.0TRF-like 6