PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013591924.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB_related | ||||||||
Protein Properties | Length: 588aa MW: 64902.2 Da PI: 6.0806 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.3 | 8.7e-09 | 494 | 542 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E lv++v ++G g W+ I + +Rt ++k++w+++l XP_013591924.1 494 AWTLSEVTTLVEGVSKYGAGKWSEIKKLSFsshSHRTSVDLKDKWRNLL 542 7**************************9999****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.501 | 487 | 546 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-13 | 489 | 548 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.0E-9 | 491 | 544 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.71E-21 | 493 | 543 | No hit | No description |
SuperFamily | SSF46689 | 2.51E-16 | 493 | 552 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 8.3E-7 | 495 | 550 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 588 aa Download sequence Send to blast |
MGTVVGTVED RREMFDVSAQ TRITPFSSTN QIGNPVAYKL VRVAGDGRLV PATDEEILEV 60 NETDVHSASD ACQSLGFLPT EGSPFRLSQL KECSEVINLG LLRSDNVEPS TDQYSEEFLQ 120 KVEQDERLVM VSTPPDANIQ CCNENNMFDE DQVHHEPLPF SSDVQNGCDV NQSNTVEPSS 180 PKETALPAAA ASQKPDFALV RGEICLDNLP IKALQETFRA TFGRETTVKD KTWLKRRITM 240 GLTKSFDVPT TNLTIKDNKL VGNQVKSNDV SDDVRATNVK EAPSSSAYHV NGHSKEASAH 300 SLGVNHYWAT EDFSCEERAA KRVRKPTRRY IEELSKTDDK SVFPSKDQRL SEKSEVRSMS 360 VSSGKRVTVT RVVPLGGSEV EVPYVSHVRR SRPRENFMAL MECHTSCLEA KASGGESNLL 420 NSEAVSPGSV VKSASGPIQN ELATSHNNTN EENILTEADQ DIEPDSSGNS SDDYNNTGAP 480 MMQGGGVRRK HHRAWTLSEV TTLVEGVSKY GAGKWSEIKK LSFSSHSHRT SVDLKDKWRN 540 LLRASFAQSP SNNMGSFKKH GSMHIPVEIL LQVRELAEKQ SLVPPNHR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013591924.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189507 | 0.0 | AC189507.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB088E11, complete sequence. | |||
GenBank | AC189607 | 0.0 | AC189607.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH031P22, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013591924.1 | 0.0 | PREDICTED: uncharacterized protein LOC106300347 isoform X3 | ||||
TrEMBL | M4DHR7 | 0.0 | M4DHR7_BRARP; Uncharacterized protein | ||||
STRING | Bra016044.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 0.0 | TRF-like 6 |