PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013591923.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB_related | ||||||||
Protein Properties | Length: 590aa MW: 65107.3 Da PI: 5.9749 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.3 | 8.7e-09 | 496 | 544 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E lv++v ++G g W+ I + +Rt ++k++w+++l XP_013591923.1 496 AWTLSEVTTLVEGVSKYGAGKWSEIKKLSFsshSHRTSVDLKDKWRNLL 544 7**************************9999****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.501 | 489 | 548 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-13 | 491 | 550 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.0E-9 | 493 | 546 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.66E-21 | 495 | 545 | No hit | No description |
SuperFamily | SSF46689 | 2.51E-16 | 495 | 554 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 8.3E-7 | 497 | 552 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 590 aa Download sequence Send to blast |
MGTVVGTVED RREMFDVSAQ TRITPFSSTN QIGNPVAYKL VRVAGDGRLV PATDEEILEV 60 NETDVHSASD ACQSLGFLPT EGSPFRLSQL KECSEGLLRS DNVEPSTDQV NSQSEYSEEF 120 LQKVEQDERL VMVSTPPDAN IQCCNENNMF DEDQVHHEPL PFSSDVQNGC DVNQSNTVEP 180 SSPKETALPA AAASQKPDFA LVRGEICLDN LPIKALQETF RATFGRETTV KDKTWLKRRI 240 TMGLTKSFDV PTTNLTIKDN KLVGNQVKSN DVSDDVRATN VKEAPSSSAY HVNGHSKEAS 300 AHSLGVNHYW ATEDFSCEER AAKRVRKPTR RYIEELSKTD DKSVFPSKDQ RLSEKSEVRS 360 MSVSSGKRVT VTRVVPLGGS EVEVPYVSHV RRSRPRENFM ALMECHTSCL EAKASGGESN 420 LLNSEAVSPG SVVKSASGPI QNELATSHNN TNEENILTEA DQDIEPDSSG NSSDDYNNTG 480 APMMQGGGVR RKHHRAWTLS EVTTLVEGVS KYGAGKWSEI KKLSFSSHSH RTSVDLKDKW 540 RNLLRASFAQ SPSNNMGSFK KHGSMHIPVE ILLQVRELAE KQSLVPPNHR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013591923.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189507 | 0.0 | AC189507.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB088E11, complete sequence. | |||
GenBank | AC189607 | 0.0 | AC189607.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH031P22, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013591923.1 | 0.0 | PREDICTED: uncharacterized protein LOC106300347 isoform X2 | ||||
TrEMBL | M4DHR7 | 0.0 | M4DHR7_BRARP; Uncharacterized protein | ||||
STRING | Bra016044.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.2 | 0.0 | TRF-like 6 |