PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013591921.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 594aa    MW: 65546.9 Da    PI: 5.9749
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013591921.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.28.8e-09500548348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E   lv++v ++G g W+ I +       +Rt  ++k++w+++l
   XP_013591921.1 500 AWTLSEVTTLVEGVSKYGAGKWSEIKKLSFsshSHRTSVDLKDKWRNLL 548
                      7**************************9999****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.501493552IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-13495554IPR009057Homeodomain-like
SMARTSM007174.0E-9497550IPR001005SANT/Myb domain
CDDcd116601.64E-21499549No hitNo description
SuperFamilySSF466892.51E-16499558IPR009057Homeodomain-like
PfamPF139218.4E-7501556No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MGTVVGTVED RREMFDVSAQ TRITPFSSTN QIGNPVAYKL VRVAGDGRLV PATDEEILEV  60
NETDVHSASD ACQSLGFLPT EGSPFRLSQL KECSEVINLG LLRSDNVEPS TDQVNSQSEY  120
SEEFLQKVEQ DERLVMVSTP PDANIQCCNE NNMFDEDQVH HEPLPFSSDV QNGCDVNQSN  180
TVEPSSPKET ALPAAAASQK PDFALVRGEI CLDNLPIKAL QETFRATFGR ETTVKDKTWL  240
KRRITMGLTK SFDVPTTNLT IKDNKLVGNQ VKSNDVSDDV RATNVKEAPS SSAYHVNGHS  300
KEASAHSLGV NHYWATEDFS CEERAAKRVR KPTRRYIEEL SKTDDKSVFP SKDQRLSEKS  360
EVRSMSVSSG KRVTVTRVVP LGGSEVEVPY VSHVRRSRPR ENFMALMECH TSCLEAKASG  420
GESNLLNSEA VSPGSVVKSA SGPIQNELAT SHNNTNEENI LTEADQDIEP DSSGNSSDDY  480
NNTGAPMMQG GGVRRKHHRA WTLSEVTTLV EGVSKYGAGK WSEIKKLSFS SHSHRTSVDL  540
KDKWRNLLRA SFAQSPSNNM GSFKKHGSMH IPVEILLQVR ELAEKQSLVP PNHR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013591921.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895070.0AC189507.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB088E11, complete sequence.
GenBankAC1896070.0AC189607.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH031P22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013591921.10.0PREDICTED: uncharacterized protein LOC106300347 isoform X1
RefseqXP_013591922.10.0PREDICTED: uncharacterized protein LOC106300347 isoform X1
TrEMBLM4DHR70.0M4DHR7_BRARP; Uncharacterized protein
STRINGBra016044.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43642649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.20.0TRF-like 6