PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013591875.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 242aa    MW: 26868.6 Da    PI: 8.2123
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013591875.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2201.9e-06214236223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +Cp+C+k F+ + +L +Hi + H
  XP_013591875.1 214 VCPKCSKGFREPGELLKHIDKdH 236
                     7******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183104.45E-12457No hitNo description
PROSITE profilePS510397.7681059IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.102.6E-101150IPR000058Zinc finger, AN1-type
PfamPF014282.4E-131349IPR000058Zinc finger, AN1-type
SMARTSM001541.4E-41352IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.102.8E-1091146IPR000058Zinc finger, AN1-type
SuperFamilySSF1183101.83E-993144No hitNo description
PROSITE profilePS510398.2798151IPR000058Zinc finger, AN1-type
PfamPF014281.7E-8101141IPR000058Zinc finger, AN1-type
SMARTSM001540.0035101142IPR000058Zinc finger, AN1-type
PROSITE profilePS501579.099213241IPR007087Zinc finger, C2H2
PROSITE patternPS000280215236IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGTPEFPDLG KHCSVDYCKQ IDFLPFTCDR CIQVFCLDHR SYMKHSCPKG NRGDVTVVIC  60
PLCAKGVRLN PDEDPNITWE KHVNTDCDPS NYEKTVKKKK CPVPRCRELL TFSNTIKCRD  120
CGIEHCLKHR FGPDHSCSGS KKLDSSFSFM GFLSTTNTKE APASSSRWSS LLASAEASIR  180
ELGNDISQKL QFSSGGDGSL GKTQERNGKV TVDVCPKCSK GFREPGELLK HIDKDHRGTS  240
IA
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013591875.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013591875.11e-180PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
RefseqXP_013706961.11e-180zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
SwissprotQ9SCM41e-152SAP13_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
TrEMBLA0A078J5Y91e-178A0A078J5Y9_BRANA; BnaCnng38560D protein
TrEMBLA0A0D3CUC61e-178A0A0D3CUC6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6H8481e-178A0A3P6H848_BRAOL; Uncharacterized protein
STRINGBo6g072950.11e-179(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39082754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57480.11e-141C2H2 family protein
Publications ? help Back to Top
  1. Dixit A, et al.
    A stress-associated protein, AtSAP13, from Arabidopsis thaliana provides tolerance to multiple abiotic stresses.
    Plant Cell Environ., 2018. 41(5): p. 1171-1185
    [PMID:29194659]