PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013591825.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 331aa MW: 36848.4 Da PI: 9.8631

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013591825.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.1	4.6e-14	254	304	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +r++r++kNRe+A rsR+RK+a++ eLe ++++L++ N++L+ + e+ k+ XP_013591825.1 254 RRQKRMIKNRESAARSRARKQAYTLELEAEIENLKQLNQDLQRKQAEIMKT 304 79***************************************9877776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.9E-11	250	308	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.461	252	303	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.8E-13	254	303	No hit	No description
CDD	cd14707	2.07E-23	254	306	No hit	No description
SuperFamily	SSF57959	1.69E-9	254	302	No hit	No description
Pfam	PF00170	2.5E-11	254	305	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	257	272	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009737	Biological Process	response to abscisic acid
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MGTHINFNSL GVDSSGGNGS DNNQSKPLGR QSSLYSLTFD ELQSTLGEPG KEFGSMNMDE 60 LLKNIWTAEE TTQPIMTTTS SIASVQQPSS GFAPGGGGLV QRQGSLTLPR TLSQKTVDEV 120 WKHLMSKDSC NGRDAPERQE TLGEMTLEDF LLRAGVVKED VNCSQQNQNN CVSTGVGIGF 180 GQPNQNNIWF KGNNSSMILN QAQQPHQQQL QQPHQRLPPT IYPKHANVTF SAPVMGKVGG 240 RRSNTGVVEK VVERRQKRMI KNRESAARSR ARKQAYTLEL EAEIENLKQL NQDLQRKQAE 300 IMKTQKNEEP SKQRPWLAKT QCLRRTLTGP W

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bol.14677	0.0	leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the ABA-responsive element (ABRE). Could participate in abscisic acid-regulated gene expression.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00087	SELEX	Transfer from AT1G49720	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013591825.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by abscisic acid (ABA) and cold. {ECO:0000269\|PubMed:10636868}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX122892	0.0	JX122892.1 Brassica napus ABA-responsive element binding factor 1 (ABF1.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013591825.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 4 isoform X2
Swissprot	Q9M7Q5	1e-145	AI5L4_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 4
TrEMBL	A0A0D3CPJ1	0.0	A0A0D3CPJ1_BRAOL; Uncharacterized protein
STRING	Bo6g018480.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49720.1	1e-121	abscisic acid responsive element-binding factor 1

Publications ? help Back to Top
Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions. Plant Mol. Biol., 2018. 97(1-2): p. 149-163 [PMID:29680877]