PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013591824.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 362aa    MW: 39869.6 Da    PI: 9.641
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013591824.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_143.95.3e-14285335555
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                     +r++r++kNRe+A rsR+RK+a++ eLe ++++L++ N++L+ +  e+ k+
  XP_013591824.1 285 RRQKRMIKNRESAARSRARKQAYTLELEAEIENLKQLNQDLQRKQAEIMKT 335
                     79***************************************9877776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.9E-11281339IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.461283334IPR004827Basic-leucine zipper domain
PfamPF001702.9E-11285336IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.18E-9285333No hitNo description
Gene3DG3DSA:1.20.5.1706.6E-13285334No hitNo description
CDDcd147073.31E-24285337No hitNo description
PROSITE patternPS000360288303IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MGTHINFNSL GVDSSGGNGS DNNQSKPLGR QSSLYSLTFD ELQSTLGEPG KEFGSMNMDE  60
LLKNIWTAEE TTQPIMTTTS SIASVQQPSS GFAPGGGGLV QRQGSLTLPR TLSQKTVDEV  120
WKHLMSKDSC NGRDAPERQE TLGEMTLEDF LLRAGVVKED VNCSQQNQNN CVSTGVGIGF  180
GQPNQNNIWF KGNNSSMILN QAQQPHQQQL QQPHQRLPPT IYPKHANVTF SAPVMGKVGV  240
SVASTSPGGT NSAENNAAWS SPVPYVFGGQ GRRSNTGVVE KVVERRQKRM IKNRESAARS  300
RARKQAYTLE LEAEIENLKQ LNQDLQRKQA EIMKTQKNEE PSKQRPWLAK TQCLRRTLTG  360
PW
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bol.146770.0leaf
Functional Description ? help Back to Top
Source Description
UniProtBinds to the ABA-responsive element (ABRE). Could participate in abscisic acid-regulated gene expression.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00087SELEXTransfer from AT1G49720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013591824.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by abscisic acid (ABA) and cold. {ECO:0000269|PubMed:10636868}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1228920.0JX122892.1 Brassica napus ABA-responsive element binding factor 1 (ABF1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013591824.10.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 4 isoform X1
SwissprotQ9M7Q51e-163AI5L4_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 4
TrEMBLA0A0D3CPJ10.0A0A0D3CPJ1_BRAOL; Uncharacterized protein
STRINGBo6g018480.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73427129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49720.11e-139abscisic acid responsive element-binding factor 1
Publications ? help Back to Top
  1. Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF
    Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions.
    Plant Mol. Biol., 2018. 97(1-2): p. 149-163
    [PMID:29680877]