PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013591784.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 138aa MW: 15098.7 Da PI: 6.1036 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.4 | 1.1e-15 | 13 | 62 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykG+r++k +g+Wv+eIr+p + r r +lg+f tae+Aa a++ a +l+ XP_013591784.1 13 KYKGIRRRK-WGKWVSEIRVPAT---RERLWLGSFSTAEGAAVAHDVAFYCLHR 62 8*****998.**********954...4*********************999985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.59E-24 | 12 | 76 | No hit | No description |
SMART | SM00380 | 5.6E-27 | 13 | 80 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-16 | 13 | 72 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.5E-7 | 13 | 60 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.903 | 13 | 74 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-24 | 13 | 74 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-9 | 14 | 25 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-9 | 36 | 52 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MDPRDGGETH QAKYKGIRRR KWGKWVSEIR VPATRERLWL GSFSTAEGAA VAHDVAFYCL 60 HRPSSLDNEA FNFPHLLQPS LASNTSPKSI QKAASDAGMG VDAGFALNND SASGGVEEGS 120 ERETLNISVY DYLDDGRI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-12 | 11 | 75 | 12 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013591784.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC016162 | 5e-86 | AC016162.5 Arabidopsis thaliana chromosome 1 BAC F3I17 genomic sequence, complete sequence. | |||
GenBank | AC016163 | 5e-86 | AC016163.6 Arabidopsis thaliana chromosome 1 BAC F26A9 genomic sequence, complete sequence. | |||
GenBank | BT010999 | 5e-86 | BT010999.1 Arabidopsis thaliana At1g71520 gene, complete cds. | |||
GenBank | BT014816 | 5e-86 | BT014816.1 Arabidopsis thaliana At1g71520 gene, complete cds. | |||
GenBank | CP002684 | 5e-86 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013591784.1 | 1e-100 | PREDICTED: ethylene-responsive transcription factor ERF020 | ||||
Swissprot | Q9C9I8 | 5e-73 | ERF20_ARATH; Ethylene-responsive transcription factor ERF020 | ||||
TrEMBL | A0A0D3CZV8 | 2e-98 | A0A0D3CZV8_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6G0B3 | 2e-98 | A0A3P6G0B3_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g113060.1 | 3e-99 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3865 | 28 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71520.1 | 2e-75 | ERF family protein |
Publications ? help Back to Top | |||
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