PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013591772.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

SBP

Protein Properties

Length: 989aa MW: 109025 Da PI: 8.5994

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013591772.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.6	1.1e-40	129	205	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqv++C++dls ak+yhrrhkvCevhska+++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ XP_013591772.1 129 CQVDNCNEDLSVAKDYHRRHKVCEVHSKATKALVGNQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTQP 205 **************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.5E-33	121	190	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.197	126	203	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	6.93E-38	127	207	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.4E-29	129	202	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	7.93E-8	754	882	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	8.0E-6	793	881	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.02E-6	794	880	No hit	No description
PROSITE profile	PS50297	9.145	827	880	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 989 aa Download sequence Send to blast
MDEVGPQVAG PVSIHHPIGR KRDLYYQMSN RQPYWLVPPQ PQNDWNPKMW EWDSQRFEAK 60 PVEAAEQSDL QVGNGTQFDL NANNNNNGGL SYEGEEIRGL DLNLSTVEET TRPSKKVKSG 120 SPGRNYPKCQ VDNCNEDLSV AKDYHRRHKV CEVHSKATKA LVGNQMQRFC QQCSRFHLLS 180 EFDEGKRSCR RRLAGHNRRR RKTQPEEVTS GGVVAASDQN KANVDVMALL TALACAQGRN 240 GTQPNGSPAV PQREQLLQIL NKINALPLPM DLVSKLNSIR VLARKNLDQP MNSRNDVNGA 300 ASSSPSTMDL LAVLSSTLGS SAPEAIAFLS QGGFGSNDKT KLTSPDQATA TNLEKRTLEF 360 PPFVGGERTS SSNNPSPSQE TRSSSLSLQL FTSSPEDERQ QPTVASLGKY YSSASSNPVE 420 DRSPSSSPVM QELFPMQTSP ETMRSNNCKN SSPCPRNSCL PLELFGGSNR GAAAANPSYA 480 SSGSDYSPPS LNSDSQDRTG KIVFKLLGKD PSQLPGTLRT EISSWLSSIP SEMESYIRPG 540 CVILSVYVAM SASAWEQLEE NLLQRVSSLV QDSEFWSSTR FLVNTGRQLA SYKHGRIRLS 600 KSWRTLSSPE LITVSPVAVV AGEETTLVVR GRSLTNDGIS FRCAHMGNYT SVEVTGTAHR 660 STKYDELNVN RFKVNTSGSL GRCFLEVENG FRSDSFPLII ANTTICKELN RLEDEFHPSS 720 REEVLCFLNE LGWLFQKKCR SESDFSLSRF KFLLVSSVER DYSSLVRALL DMIVERDGVM 780 SKESLDMLAE SQLLSRAVKR KNTKMAETLI HYSAKRFIFL PSVKGPGGIT PLHLAASTSG 840 SEDMIDVLTN DPQEIGLSSW NTLIDASGQT PFSYAAMRSN HGYNTLVSRK LADKRNGQVS 900 LNIENGIDQI GLSKRLSSDL KRSCNTCASV ALKYQKKVSG TRRLFPTRII HSMVAVATVC 960 VCVCVFMHAF PIVRQGSHFS WGGLDYGSV

Sequence ? help Back to Top

Protein Sequence Length: 989 aa Download sequence Send to blast

MDEVGPQVAG PVSIHHPIGR KRDLYYQMSN RQPYWLVPPQ PQNDWNPKMW EWDSQRFEAK  60
PVEAAEQSDL QVGNGTQFDL NANNNNNGGL SYEGEEIRGL DLNLSTVEET TRPSKKVKSG  120
SPGRNYPKCQ VDNCNEDLSV AKDYHRRHKV CEVHSKATKA LVGNQMQRFC QQCSRFHLLS  180
EFDEGKRSCR RRLAGHNRRR RKTQPEEVTS GGVVAASDQN KANVDVMALL TALACAQGRN  240
GTQPNGSPAV PQREQLLQIL NKINALPLPM DLVSKLNSIR VLARKNLDQP MNSRNDVNGA  300
ASSSPSTMDL LAVLSSTLGS SAPEAIAFLS QGGFGSNDKT KLTSPDQATA TNLEKRTLEF  360
PPFVGGERTS SSNNPSPSQE TRSSSLSLQL FTSSPEDERQ QPTVASLGKY YSSASSNPVE  420
DRSPSSSPVM QELFPMQTSP ETMRSNNCKN SSPCPRNSCL PLELFGGSNR GAAAANPSYA  480
SSGSDYSPPS LNSDSQDRTG KIVFKLLGKD PSQLPGTLRT EISSWLSSIP SEMESYIRPG  540
CVILSVYVAM SASAWEQLEE NLLQRVSSLV QDSEFWSSTR FLVNTGRQLA SYKHGRIRLS  600
KSWRTLSSPE LITVSPVAVV AGEETTLVVR GRSLTNDGIS FRCAHMGNYT SVEVTGTAHR  660
STKYDELNVN RFKVNTSGSL GRCFLEVENG FRSDSFPLII ANTTICKELN RLEDEFHPSS  720
REEVLCFLNE LGWLFQKKCR SESDFSLSRF KFLLVSSVER DYSSLVRALL DMIVERDGVM  780
SKESLDMLAE SQLLSRAVKR KNTKMAETLI HYSAKRFIFL PSVKGPGGIT PLHLAASTSG  840
SEDMIDVLTN DPQEIGLSSW NTLIDASGQT PFSYAAMRSN HGYNTLVSRK LADKRNGQVS  900
LNIENGIDQI GLSKRLSSDL KRSCNTCASV ALKYQKKVSG TRRLFPTRII HSMVAVATVC  960
VCVCVFMHAF PIVRQGSHFS WGGLDYGSV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	7e-30	119	202	3	84	squamosa promoter binding protein-like 4
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bol.12143	0.0	leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013591772.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013591771.1	0.0	PREDICTED: squamosa promoter-binding-like protein 16
Refseq	XP_013591772.1	0.0	PREDICTED: squamosa promoter-binding-like protein 16
Swissprot	Q700C2	0.0	SPL16_ARATH; Squamosa promoter-binding-like protein 16
TrEMBL	A0A0D3D174	0.0	A0A0D3D174_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6G1L7	0.0	A0A3P6G1L7_BRAOL; Uncharacterized protein
STRING	Bo6g120690.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76580.1	0.0	SBP family protein