PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013591771.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | SBP | ||||||||
Protein Properties | Length: 989aa MW: 109025 Da PI: 8.5994 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129.6 | 1.1e-40 | 129 | 205 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqv++C++dls ak+yhrrhkvCevhska+++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ XP_013591771.1 129 CQVDNCNEDLSVAKDYHRRHKVCEVHSKATKALVGNQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTQP 205 **************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.5E-33 | 121 | 190 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.197 | 126 | 203 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 6.93E-38 | 127 | 207 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.4E-29 | 129 | 202 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF48403 | 7.93E-8 | 754 | 882 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 8.0E-6 | 793 | 881 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.02E-6 | 794 | 880 | No hit | No description |
PROSITE profile | PS50297 | 9.145 | 827 | 880 | IPR020683 | Ankyrin repeat-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 989 aa Download sequence Send to blast |
MDEVGPQVAG PVSIHHPIGR KRDLYYQMSN RQPYWLVPPQ PQNDWNPKMW EWDSQRFEAK 60 PVEAAEQSDL QVGNGTQFDL NANNNNNGGL SYEGEEIRGL DLNLSTVEET TRPSKKVKSG 120 SPGRNYPKCQ VDNCNEDLSV AKDYHRRHKV CEVHSKATKA LVGNQMQRFC QQCSRFHLLS 180 EFDEGKRSCR RRLAGHNRRR RKTQPEEVTS GGVVAASDQN KANVDVMALL TALACAQGRN 240 GTQPNGSPAV PQREQLLQIL NKINALPLPM DLVSKLNSIR VLARKNLDQP MNSRNDVNGA 300 ASSSPSTMDL LAVLSSTLGS SAPEAIAFLS QGGFGSNDKT KLTSPDQATA TNLEKRTLEF 360 PPFVGGERTS SSNNPSPSQE TRSSSLSLQL FTSSPEDERQ QPTVASLGKY YSSASSNPVE 420 DRSPSSSPVM QELFPMQTSP ETMRSNNCKN SSPCPRNSCL PLELFGGSNR GAAAANPSYA 480 SSGSDYSPPS LNSDSQDRTG KIVFKLLGKD PSQLPGTLRT EISSWLSSIP SEMESYIRPG 540 CVILSVYVAM SASAWEQLEE NLLQRVSSLV QDSEFWSSTR FLVNTGRQLA SYKHGRIRLS 600 KSWRTLSSPE LITVSPVAVV AGEETTLVVR GRSLTNDGIS FRCAHMGNYT SVEVTGTAHR 660 STKYDELNVN RFKVNTSGSL GRCFLEVENG FRSDSFPLII ANTTICKELN RLEDEFHPSS 720 REEVLCFLNE LGWLFQKKCR SESDFSLSRF KFLLVSSVER DYSSLVRALL DMIVERDGVM 780 SKESLDMLAE SQLLSRAVKR KNTKMAETLI HYSAKRFIFL PSVKGPGGIT PLHLAASTSG 840 SEDMIDVLTN DPQEIGLSSW NTLIDASGQT PFSYAAMRSN HGYNTLVSRK LADKRNGQVS 900 LNIENGIDQI GLSKRLSSDL KRSCNTCASV ALKYQKKVSG TRRLFPTRII HSMVAVATVC 960 VCVCVFMHAF PIVRQGSHFS WGGLDYGSV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 7e-30 | 119 | 202 | 3 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bol.12143 | 0.0 | leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013591771.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013591771.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 16 | ||||
Refseq | XP_013591772.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 16 | ||||
Swissprot | Q700C2 | 0.0 | SPL16_ARATH; Squamosa promoter-binding-like protein 16 | ||||
TrEMBL | A0A0D3D174 | 0.0 | A0A0D3D174_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6G1L7 | 0.0 | A0A3P6G1L7_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g120690.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3999 | 25 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76580.1 | 0.0 | SBP family protein |