PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013591746.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 418aa MW: 47322.2 Da PI: 6.0008 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.4 | 2.4e-52 | 24 | 151 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 l+pGfrFhPtdeelv++yLk+kv gk++++ ++i evdiyk+ePwdL ++++++++ewyf+s dkky +g r nrat++gyWkatgkd+e+ XP_013591746.1 24 LAPGFRFHPTDEELVSYYLKRKVLGKPVRF-DAIGEVDIYKHEPWDLAvfSRLRTRDQEWYFYSALDKKYGNGARMNRATNKGYWKATGKDREIR 117 579************************999.99**************8544888999************************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + + g+kktLvf++grap+g +t+Wvmheyrl XP_013591746.1 118 R-DVQILGMKKTLVFHSGRAPDGLRTNWVMHEYRL 151 9.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.32E-60 | 18 | 176 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.37 | 24 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.7E-27 | 26 | 151 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 418 aa Download sequence Send to blast |
MGRESVAVAV SSPAKGAVVA ATALAPGFRF HPTDEELVSY YLKRKVLGKP VRFDAIGEVD 60 IYKHEPWDLA VFSRLRTRDQ EWYFYSALDK KYGNGARMNR ATNKGYWKAT GKDREIRRDV 120 QILGMKKTLV FHSGRAPDGL RTNWVMHEYR LVDYETESNG NLVQDPYVLC RIFHKNNIGP 180 PSGNRYAPFM EEEWADDGVT LIPGVDVGVR AEPLSLANGN NQMSQNSIQS PSKDFININE 240 PPRETTTPMD IELNHKNNHC DEDEEALKRE EADEDHDRPP PLCILNKEAP LPLLQYKRRR 300 QNESSRITQD HCSSTTTTVD NTPTAAMATN TAISALLEFS LMGLSDKKEN PQPPLTPLPS 360 PEEKLNDLKK EVHQMSVERE TFKLEMMSAE AMISILQSRI DALRQENDEL KKNSANGH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 6e-47 | 23 | 177 | 19 | 170 | NAC domain-containing protein 19 |
3swm_B | 6e-47 | 23 | 177 | 19 | 170 | NAC domain-containing protein 19 |
3swm_C | 6e-47 | 23 | 177 | 19 | 170 | NAC domain-containing protein 19 |
3swm_D | 6e-47 | 23 | 177 | 19 | 170 | NAC domain-containing protein 19 |
3swp_A | 6e-47 | 23 | 177 | 19 | 170 | NAC domain-containing protein 19 |
3swp_B | 6e-47 | 23 | 177 | 19 | 170 | NAC domain-containing protein 19 |
3swp_C | 6e-47 | 23 | 177 | 19 | 170 | NAC domain-containing protein 19 |
3swp_D | 6e-47 | 23 | 177 | 19 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in floral organs, and, at low levels, in other organs. {ECO:0000269|PubMed:25578968}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC050 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). Regulates siRNA-dependent post-transcriptional gene silencing (PTGS) through SGS3 expression modulation (PubMed:28207953). Required during pollen development (PubMed:19237690). {ECO:0000269|PubMed:19237690, ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990, ECO:0000269|PubMed:28207953}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013591746.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by type III effector proteins (TTEs) secreted by the pathogenic bacteria P.syringae pv. tomato DC3000 during basal defense. {ECO:0000269|PubMed:16553893}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC966753 | 0.0 | KC966753.1 Brassica napus NAC transcription factor 51 (NAC51.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013591746.1 | 0.0 | PREDICTED: NAC domain-containing protein 37-like | ||||
Swissprot | Q9SQY0 | 0.0 | NAC52_ARATH; NAC domain containing protein 52 | ||||
TrEMBL | A0A0D3AEQ2 | 0.0 | A0A0D3AEQ2_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g143850.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1780 | 28 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10480.1 | 0.0 | NAC domain containing protein 50 |
Publications ? help Back to Top | |||
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