PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013591289.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 278aa MW: 30542.4 Da PI: 7.4416 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.4 | 0.00022 | 114 | 136 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H XP_013591289.1 114 FSCNYCQRKFYSSQALGGHQNAH 136 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.29E-6 | 111 | 141 | No hit | No description |
PROSITE profile | PS50157 | 11.427 | 114 | 141 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 116 | 136 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 278 aa Download sequence Send to blast |
MVSIYNCKKV LKKIKQPLVA AQTMRSILDL EAEASSEHNH PEDTTSSQAA SNLYPVAENC 60 RPISLNLSLR FDDNNNLDLE SSSLTLPISS TSESNNPEQQ QQQQQQPSAS KRVFSCNYCQ 120 RKFYSSQALG GHQNAHKRER TLAKRAMRMG LAGVFPRGSS GPYATAALSC LPLHGNMTSV 180 RTLGIQAHGS SHDLRPAPET IIRNIARFNQ GYFSNCVPFY VEDDGTELLW LGSFRQAAGA 240 AVAAEACNDN LGESKMDFLE VKKAVDMESC LPDLTLKL |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 10 | 15 | LKKIKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013591289.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013591289.1 | 0.0 | PREDICTED: zinc finger protein 4 isoform X1 | ||||
Swissprot | Q39263 | 1e-101 | ZFP4_ARATH; Zinc finger protein 4 | ||||
TrEMBL | A0A0D3CYB7 | 0.0 | A0A0D3CYB7_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g099730.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6672 | 26 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66140.1 | 2e-95 | zinc finger protein 4 |
Publications ? help Back to Top | |||
---|---|---|---|
|