PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013591249.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 225aa MW: 23501.1 Da PI: 9.3413

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013591249.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121	4.2e-38	26	86	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprC+stntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++PvGgg+rk k+s XP_013591249.1 26 QQEQLPCPRCNSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGGTRKAAKRS 86 68999***************************************************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-30	24	84	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.0E-33	28	84	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.975	30	84	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	32	68	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0009751	Biological Process	response to salicylic acid
GO:0042545	Biological Process	cell wall modification
GO:0045787	Biological Process	positive regulation of cell cycle
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MTTTSNTNAM RLHGVITGNP PPATEQQEQL PCPRCNSTNT KFCYYNNYNF SQPRHFCKSC 60 RRYWTHGGTL RDIPVGGGTR KAAKRSRTCS SSAGSRSVPL QATPVLFPQS SISNGVSHTV 120 TAPLDGKGSA LSLSGSFTSL LNQNATATHG SGSVLGIGLG SGYDDVSFGL GRAVWPFSTV 180 GDAGTTNVGS NGGHQGVVTI PATWQFEGLE TNNAGGFVSV LAQVL

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Constitutively expressed in the whole plant. {ECO:0000269\|PubMed:10758484, ECO:0000269\|PubMed:8718629}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00402	DAP	Transfer from AT3G50410	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013591249.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and salicylic acid (SA). {ECO:0000269\|PubMed:10758484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189379	1e-104	AC189379.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB049N17, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013591249.1	1e-165	PREDICTED: dof zinc finger protein DOF3.4 isoform X2
Swissprot	Q39088	1e-95	DOF34_ARATH; Dof zinc finger protein DOF3.4
TrEMBL	A0A078IZQ4	1e-158	A0A078IZQ4_BRANA; BnaC01g42310D protein
TrEMBL	A0A0D3A9Q3	1e-158	A0A0D3A9Q3_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6FRL3	1e-158	A0A3P6FRL3_BRAOL; Uncharacterized protein
STRING	Bo1g084780.1	1e-159	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	4e-92	OBF binding protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]