PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013591225.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family RAV
Protein Properties Length: 309aa    MW: 35937.6 Da    PI: 7.1305
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013591225.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.55.8e-122067154
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                    ++ykGV ++  +g W A+I++      +kr++lg+f +a eAa  ++ a  kl+
  XP_013591225.1 20 TKYKGVVQHQ-NGHWGAQIYVD-----HKRIWLGTFKSAAEAAMSYDSASIKLR 67
                    69*****999.8*********3.....4*********************99998 PP
2B3887.5e-28142233184
                     EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                     f+k+lt sdv+k++rlv+pkk+a ++        +g+  e+++++++d++ r+W+++++y+ +s+++vlt+GW +Fvk+++Lke+D+++F+ 
  XP_013591225.1 142 FQKELTASDVGKLNRLVIPKKYAVKYlpfisereEGEIVEDVEVVFYDREMRQWKFRYCYWSSSQSFVLTRGWIGFVKEKRLKEKDVITFYT 233
                     99****************************99985566799*************************************************93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.43E-232080No hitNo description
PROSITE profilePS5103216.8712178IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-152178IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-142180IPR016177DNA-binding domain
SMARTSM003802.1E-172184IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.0E-31135244IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.05E-27140234IPR015300DNA-binding pseudobarrel domain
CDDcd100172.47E-26141232No hitNo description
PfamPF023625.6E-25142233IPR003340B3 DNA binding domain
PROSITE profilePS5086312.506142253IPR003340B3 DNA binding domain
SMARTSM010191.3E-18142245IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MRLNEPPTTD KALVSASDNT KYKGVVQHQN GHWGAQIYVD HKRIWLGTFK SAAEAAMSYD  60
SASIKLRTFD ANSQRNFPWS DLTVHEPVFQ KGYTTEAVLN MIKDGSYQRE FKEFLKNRSQ  120
IVSKQNRRDE ESNKQFSCTQ LFQKELTASD VGKLNRLVIP KKYAVKYLPF ISEREEGEIV  180
EDVEVVFYDR EMRQWKFRYC YWSSSQSFVL TRGWIGFVKE KRLKEKDVIT FYTCDVPTLE  240
GQSKKFLMID VHYFSDNDSA VTDEEVNKTV HNSFDDVMKP EINSKLGGEE EAKPEEIKGG  300
FMLFGVRIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-2414123113100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013591225.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893010.0AC189301.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB030D08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013591225.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
RefseqXP_013701468.20.0AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6P51e-153RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A078HFG30.0A0A078HFG3_BRANA; BnaC06g03690D protein
TrEMBLA0A0D3CPS40.0A0A0D3CPS4_BRAOL; Uncharacterized protein
STRINGBo6g022280.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-146RAV family protein