PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013591191.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 698aa    MW: 78739.7 Da    PI: 5.7561
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013591191.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.12.7e-172378156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +r+ +++t +q+++Le++F+++++p +++r  L ++l+L+ +q+k+WFqN+R++ k
  XP_013591191.1 23 KRTYHRHTFQQTQRLEAYFKECPNPEESQRLSLGEELNLEPDQIKFWFQNKRTQNK 78
                    68889999*********************************************998 PP
2START106.25.4e-342224379206
                     HHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT.. CS
           START   9 elvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg.. 88 
                     e++k+  ++e++Wv ss   +  + +e++ kf+ s         ++e ++++++v+ ++++l e +ld+  +W + ++    ka+t+ ++ s   
  XP_013591191.1 222 EELKRLFVTEDLWVMSSidgTYVIDQESYEKFSHSIKhfrklsARVESSKDVTLVPIEATNLIEMFLDSE-KWERLFPtivaKAMTIHKLGSElp 315
                     77888899*********988777788888888776668899999**************************.99999999999************* PP

                     .....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEE...EE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--S CS
           START  89 .....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvS...vdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkg 174
                          + lq++  +l  lsplvp R+f++vR++++  +g w+++dvS   vds+q +p       + ++pSg+li+  ++ hs+vtw+ehv+++ 
  XP_013591191.1 316 inencNNLQVIWEKLHILSPLVPpREFMIVRCCQKIDEGIWIVADVSqriVDSDQINPF------CYKRPSGCLIRAFPGAHSEVTWIEHVEVDH 404
                     ***********************************************777778888776......788*************************99 PP

                     SXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 175 rlp.hwllrslvksglaegaktwvatlqrqcek 206
                     +   hwl+r l+  g   gak+w+ tl+r ce+
  XP_013591191.1 405 KPDaHWLYRELLCGGSGYGAKRWTTTLERMCER 437
                     8778***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.6E-18874IPR009057Homeodomain-like
SuperFamilySSF466892.18E-16979IPR009057Homeodomain-like
PROSITE profilePS5007115.9042080IPR001356Homeobox domain
SMARTSM003891.8E-122284IPR001356Homeobox domain
CDDcd000861.30E-132380No hitNo description
PfamPF000467.0E-152378IPR001356Homeobox domain
PROSITE profilePS5084829.97206440IPR002913START domain
SuperFamilySSF559613.08E-22208438No hitNo description
CDDcd088751.17E-81212436No hitNo description
SMARTSM002342.1E-15214437IPR002913START domain
Gene3DG3DSA:3.30.530.207.0E-6215401IPR023393START-like domain
PfamPF018527.1E-28221437IPR002913START domain
SuperFamilySSF559612.88E-10460660No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MDHNGGGNSS SEHTSVNAKK REKRTYHRHT FQQTQRLEAY FKECPNPEES QRLSLGEELN  60
LEPDQIKFWF QNKRTQNKTQ IERNANILLR EENKKIKCEN EAMLEALRIV TCPDCGGPPL  120
GVERDHNFQN LGLANTFLTE KRDELANTVS MNQHQQNMVN LFASVQGQQI FDTHTSYGTI  180
PNSLMNDPSN SVGSSTSQDI QLQLISQMDI TQLSETATRA VEELKRLFVT EDLWVMSSID  240
GTYVIDQESY EKFSHSIKHF RKLSARVESS KDVTLVPIEA TNLIEMFLDS EKWERLFPTI  300
VAKAMTIHKL GSELPINENC NNLQVIWEKL HILSPLVPPR EFMIVRCCQK IDEGIWIVAD  360
VSQRIVDSDQ INPFCYKRPS GCLIRAFPGA HSEVTWIEHV EVDHKPDAHW LYRELLCGGS  420
GYGAKRWTTT LERMCERMAL SSIRTIPATD WSEAIATVEG RMSVMKLGER MVKNFNEMLA  480
MSGKVDFPQQ SKCGVRISIR MNHDSGQPSG LVVSAASSFS VPITPLQVFD SLLNNETRHQ  540
WDVLCYRSAV SVTARILTGS NENNYITILL PTQREDDVIS MSQGPKRNMM MLQECYMDAL  600
GGMIVYAPLD MASMSLATSG EVDPLKIPIL SSGFTISNDG RRSMVAEEGG TILTVVFQIL  660
VSEDKRISGL NEQSVDTVTS LISSTVRNIK LLLNCPLE
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the embryo at early stage and in the endosperm. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013591191.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013591191.10.0PREDICTED: homeobox-leucine zipper protein HDG8-like
SwissprotQ9M9P40.0HDG8_ARATH; Homeobox-leucine zipper protein HDG8
TrEMBLA0A398AU250.0A0A398AU25_BRACM; Uncharacterized protein
STRINGBra021363.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM127911530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03260.10.0homeodomain GLABROUS 8