PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013591133.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 257aa MW: 28974.3 Da PI: 4.8941 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.6 | 6.6e-18 | 65 | 115 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+G+r+++ +grW+AeIrdp + r++lg+f tae+Aa+a++ +k+l+g XP_013591133.1 65 SEYRGIRRRP-WGRWAAEIRDPI----KgVRVWLGTFNTAEDAARAYDFEAKRLRG 115 569*******.**********72....46*******************99999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.05E-22 | 65 | 124 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.33E-30 | 65 | 124 | No hit | No description |
Pfam | PF00847 | 5.9E-11 | 66 | 115 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-37 | 66 | 129 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.933 | 66 | 123 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-30 | 66 | 124 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-11 | 67 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-11 | 89 | 105 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0034059 | Biological Process | response to anoxia | ||||
GO:0071456 | Biological Process | cellular response to hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MCGGAVISDY IAPGAGKPSW RSDNVVDLTL DDLEGDSQYY PWLGVKREDG RMRKKKKKKK 60 KSVSSEYRGI RRRPWGRWAA EIRDPIKGVR VWLGTFNTAE DAARAYDFEA KRLRGVKAKL 120 NFPNESPASS SRKRKASSPP PTQRPQVQKI EEKHEGDDLG GGYFDFLWEE NNNADASQVD 180 TQWLEDVIVM GDDAEKRQRG SYDCEGDVDG LFSDELLAFE NQTECFLQTP FMEGGNCGSL 240 TSLSSLLDEV NVMDLWS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-21 | 66 | 123 | 5 | 63 | ATERF1 |
3gcc_A | 8e-21 | 66 | 123 | 5 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 51 | 58 | MRKKKKKK |
2 | 52 | 60 | RKKKKKKKK |
3 | 54 | 60 | KKKKKKK |
4 | 54 | 72 | KKKKKKKSVSSEYRGIRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00230 | DAP | Transfer from AT1G72360 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013591133.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189575 | 1e-69 | AC189575.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011C10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013591133.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF073 | ||||
Swissprot | Q8H0T5 | 2e-72 | ERF73_ARATH; Ethylene-responsive transcription factor ERF073 | ||||
TrEMBL | A0A0D3D039 | 0.0 | A0A0D3D039_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g115850.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13737 | 16 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72360.2 | 3e-77 | ERF family protein |
Publications ? help Back to Top | |||
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