PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013591013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 416aa MW: 46195.5 Da PI: 4.9179 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.2 | 5.2e-31 | 248 | 305 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDg++WrKYGqK+vkg+++prsYY+Ct++ C vkk+ver aed k++ +tY g H+h+ XP_013591013.1 248 DDGFRWRKYGQKVVKGNPNPRSYYKCTYTACDVKKHVERGAEDVKFLLVTYDGIHEHD 305 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.0E-30 | 233 | 307 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.63 | 242 | 307 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.85E-26 | 242 | 307 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.7E-34 | 247 | 306 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.4E-23 | 248 | 304 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence Send to blast |
MNAFDGTYRG VRTCWAAPSS PSPRSLLAML NQGDNNDVVD QINEIFPQTN HQPEQRSSLR 60 ERVAARVEFN LPPLETQNNR PFAAFFRNPS TTVPSPLVLI SPGFSPSAML QFPNMFIDPS 120 HMILPSPVAN GGPPEAVESS GADHATMMIS NNDPMHVALP PQQVAAFGSG PTVNETDLIN 180 MEIDRKNEDE EEYKEDEDEE HNIVDELDAE PSSPKRRKFG ESTMIGATRS CKSQRVIIQM 240 ETEENNPDDG FRWRKYGQKV VKGNPNPRSY YKCTYTACDV KKHVERGAED VKFLLVTYDG 300 IHEHDPPAAR GSSSSGLKGQ YSSSVSQDHS NHRTVPPSSS SASEALRLFP SSLDPPVDMT 360 QFYMTGLAKL PSLPVNQNHG LMNWNVEPEI DRVIPDGTEV FKGIRDRLNL NFGLNL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 9e-25 | 238 | 308 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 9e-25 | 238 | 308 | 8 | 78 | Probable WRKY transcription factor 4 |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the endosperm of embryo from the two nuclei stage to the late globular embryo stage, including the endosperm cellularization time. {ECO:0000269|PubMed:16293693}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in male gametophytes (pollen) and in the endosperm of fertilized ovules. {ECO:0000269|PubMed:16293693}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates seed size by negatively regulating the cellularization of syncytial endosperm (PubMed:16293693). {ECO:0000250|UniProtKB:Q9SI37, ECO:0000269|PubMed:16293693}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013591013.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM593151 | 0.0 | KM593151.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY65) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013591013.1 | 0.0 | PREDICTED: probable WRKY transcription factor 10 | ||||
Swissprot | Q9LG05 | 8e-57 | WRK10_ARATH; Probable WRKY transcription factor 10 | ||||
TrEMBL | A0A0A7RCG9 | 0.0 | A0A0A7RCG9_BRAOC; WRKY65 protein | ||||
TrEMBL | A0A0D3CSF5 | 0.0 | A0A0D3CSF5_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g051390.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10299 | 17 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55600.1 | 2e-57 | WRKY DNA-binding protein 10 |