PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013591012.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 243aa    MW: 26989.7 Da    PI: 5.1805
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013591012.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.3e-1966115255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g
  XP_013591012.1  66 TYRGVRKRS-WGKWVSEIREPKK---KSRIWLGTYPTAEMAARAHDVAALAIKG 115
                     69****888.**********854...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.53866123IPR001471AP2/ERF domain
PfamPF008475.3E-1366115IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-3166124IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-2166123IPR016177DNA-binding domain
SMARTSM003801.6E-3566129IPR001471AP2/ERF domain
PRINTSPR003671.2E-106778IPR001471AP2/ERF domain
CDDcd000181.60E-3167125No hitNo description
PRINTSPR003671.2E-1089105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MEKQINVESS ATHHQEDNNA SAITTSTVAA VNSSESWSSK RYLVQDTEAG GKRRKRNGGN  60
GNKNPTYRGV RKRSWGKWVS EIREPKKKSR IWLGTYPTAE MAARAHDVAA LAIKGNSGYL  120
NFPELSGLLP RPVSCSPKDI QAAAAKAAEV MWQEPVIDEK FANERSHSQL STAQSSTSSS  180
FVFSSDTIDT LSTDKESNEE TVFDLPDLFM EGFLNHDDSF GYYESTTTWQ LYGEDVGFAW  240
LDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1659123772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013591012.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013591012.10.0PREDICTED: ethylene-responsive transcription factor ERF035-like
SwissprotQ9M2104e-95ERF35_ARATH; Ethylene-responsive transcription factor ERF035
TrEMBLA0A0D3CUZ10.0A0A0D3CUZ1_BRAOL; Uncharacterized protein
STRINGBo6g077080.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60490.11e-78ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]