PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013590995.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 231aa    MW: 25709.3 Da    PI: 4.7637
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013590995.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.4e-193888155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +gy+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++aa++ ++g
  XP_013590995.1 38 PGYRGVRMRT-WGKWVSEIREPRK---KSRIWLGTFSTAEMAARAHDAAALTIKG 88
                    79*****998.**********843...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.15E-233898No hitNo description
PfamPF008475.6E-133888IPR001471AP2/ERF domain
SMARTSM003801.5E-3639102IPR001471AP2/ERF domain
PROSITE profilePS5103223.2883996IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-223997IPR016177DNA-binding domain
PRINTSPR003677.7E-114051IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-324097IPR001471AP2/ERF domain
PRINTSPR003677.7E-116278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MTSSSIKQPS QVEEENHHHQ DQEESHRTNN KKRVRPDPGY RGVRMRTWGK WVSEIREPRK  60
KSRIWLGTFS TAEMAARAHD AAALTIKGTS AVLNFPELAT YLPRPASSSP RDVQAAAAVA  120
AAMDPTTVVV SEMHLSSASS YSTSTMSSLL SPSSEEAASS TPAEELTEIV ELPSLETSYD  180
EMWSEFVYVD PEYPPSSPWY FNNSCFYYHS DETGTSMPEP FESSNFGPLF P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1840961572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013590995.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0042601e-107AC004260.1 Arabidopsis thaliana chromosome I BAC T14N5 genomic sequence, complete sequence.
GenBankAY5608751e-107AY560875.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g77200) mRNA, complete cds.
GenBankCP0026841e-107CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankDQ4464371e-107DQ446437.1 Arabidopsis thaliana clone pENTR221-At1g77200 AP2 domain-containing transcription factor TINY (At1g77200) mRNA, complete cds.
GenBankDQ6529381e-107DQ652938.1 Arabidopsis thaliana clone 0000016559_0000011559 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590995.11e-170PREDICTED: ethylene-responsive transcription factor ERF037-like
SwissprotO806545e-93ERF37_ARATH; Ethylene-responsive transcription factor ERF037
TrEMBLA0A0D3CW761e-168A0A0D3CW76_BRAOL; Uncharacterized protein
TrEMBLA0A3P6H3Q81e-168A0A3P6H3Q8_BRAOL; Uncharacterized protein
STRINGBo6g083410.11e-169(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77200.12e-80ERF family protein