PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013590991.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 358aa    MW: 40849.1 Da    PI: 5.5639
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013590991.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.31e-30229288159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  XP_013590991.1 229 MNDGCQWRKYGQKTAKGNPCPRAYYRCTVApGCPVRKQVQRCFEDMSILITTYEGTHNHP 288
                     58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.0E-33214290IPR003657WRKY domain
SuperFamilySSF1182906.15E-28222290IPR003657WRKY domain
PROSITE profilePS5081129.092224290IPR003657WRKY domain
SMARTSM007741.9E-37229289IPR003657WRKY domain
PfamPF031062.1E-27230288IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MEFDFSSSKS KSNKQXTEVC FSSPLIDMDL SLRLEKEKDE ERSKHSCEKE EEDDDDGASE  60
DKDEQMVKED EIEDFFLSSR TRKEENEREE LLQMQIEMEH VKEENMRLRK LVEQTLQDYR  120
QLEMKFPVID HTDKMDLETF LGAQAKARKK GVERSASLPS VEGELGLSLS LQKKQKREES  180
KAAESHNAQR YNSSSTIQGQ DTTQRVITSS PGNRKARVSV RARCETATMN DGCQWRKYGQ  240
KTAKGNPCPR AYYRCTVAPG CPVRKQVQRC FEDMSILITT YEGTHNHPLP VGATAMASTA  300
STSSFLLLDS SDNLSRPSYF QQNGNDNRSI RSLINFDDPS SRGGDHVSSS QNRLNWMM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-23216292176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013590991.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by potassium deprivation. {ECO:0000269|PubMed:15173595}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300320.0KF430032.1 Brassica rapa WRKY transcription factor 9 (WRKY9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590991.10.0PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 9
SwissprotQ9C9F01e-161WRKY9_ARATH; Probable WRKY transcription factor 9
TrEMBLA0A3P6H6P50.0A0A3P6H6P5_BRAOL; Uncharacterized protein (Fragment)
STRINGBo6g106590.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67362741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.11e-122WRKY DNA-binding protein 9