PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013590975.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 206aa MW: 22992.3 Da PI: 6.1213 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.3 | 9e-19 | 41 | 90 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ykGVr++ +g+WvAeIr+p + r +r +lg+f+t eAa a++ a++kl+g XP_013590975.1 41 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSREAALAYDSAARKLYG 90 69****999.**********8...3.35*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.90E-30 | 40 | 99 | No hit | No description |
PROSITE profile | PS51032 | 21.865 | 41 | 98 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.42E-21 | 41 | 99 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 9.1E-35 | 41 | 104 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.5E-14 | 41 | 90 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.9E-30 | 41 | 99 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.1E-10 | 42 | 53 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.1E-10 | 64 | 80 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MSSIESNVMM VGANKKQRTV QASSRKGCMR GKGGPDNASC TYKGVRQRTW GKWVAEIREP 60 NRGARLWLGT FDTSREAALA YDSAARKLYG PEAHLNIPHE PVRSYPETTQ TPSSNSGGKS 120 DCWVNKESPC SSNEMSSWGT REEISWENMN ADLPVTDDSS IWEEATMSLG FPWVHEGDDN 180 FSAFNTCISG GYSNWDSFNF PTLRFH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-17 | 42 | 98 | 6 | 63 | ATERF1 |
3gcc_A | 2e-17 | 42 | 98 | 6 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00240 | DAP | Transfer from AT1G75490 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013590975.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189586 | 0.0 | AC189586.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH012I05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013590975.1 | 1e-154 | PREDICTED: dehydration-responsive element-binding protein 2D | ||||
Swissprot | Q9LQZ2 | 1e-111 | DRE2D_ARATH; Dehydration-responsive element-binding protein 2D | ||||
TrEMBL | A0A078JCP6 | 1e-153 | A0A078JCP6_BRANA; BnaC06g43980D protein | ||||
TrEMBL | A0A0D3D0X1 | 1e-153 | A0A0D3D0X1_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6H803 | 1e-153 | A0A3P6H803_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g119660.1 | 1e-153 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5399 | 26 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75490.1 | 1e-114 | ERF family protein |
Publications ? help Back to Top | |||
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